UCVM Install - Revision history

Maechlin at 20:10, 23 November 2022

2022-11-23T20:10:03Z

2022-11-23T19:56:16Z

2022-11-23T19:36:30Z

Phase 2 - Install Plotting Scripts

2022-11-23T19:31:44Z

2022-11-16T19:28:48Z

Background Infor and Resources

2022-11-16T19:28:03Z

2022-11-16T19:11:06Z

2022-11-16T19:08:26Z

Overview of Installing UCVM on Discovery

2022-05-17T16:01:22Z

2022-05-17T03:33:17Z

Overview of Installing UCVM on Discovery

@@ Line 79: / Line 79: @@
 ) install conda python2 virtual environment and plotting libraries
-conda create -n Python2 python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires
+conda create -n python2 python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires
 ) move to ucvm227 bin directory and clone ucvm_plotting

@@ Line 72: / Line 72: @@
 == Phase 2 - Install Plotting Scripts ==
 ) install conda python2 virtual environment and plotting libraries
 conda create -n Python2 python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires
 ) move to ucvm227 bin directory and clone ucvm_plotting

@@ Line 77: / Line 77: @@
 conda create -n Python2 python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires
-** [[https://github.com/SCECcode/ucvm_plotting/wiki/Installation ucvm_plotting]]
 ) move to ucvm227 bin directory and clone ucvm_plotting
@@ Line 83: / Line 83: @@
 ) run plotting installation
 ) confirm plotting runs from test_ucvm directory
 ) activate python2
 * conda activate python2

← Older revision		Revision as of 19:31, 23 November 2022
Line 74:		Line 74:

	14) install conda python2 virtual environment and plotting libraries		14) install conda python2 virtual environment and plotting libraries
		+
		+	conda create -n Python2 python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires
		+
	** [[https://github.com/SCECcode/ucvm_plotting/wiki/Installation ucvm_plotting]]		** [[https://github.com/SCECcode/ucvm_plotting/wiki/Installation ucvm_plotting]]

@@ Line 3: / Line 3: @@
 Create /project Storage /project/scec_608/<username>
-CARC System Overview:
+CARC System Overview (hardware and queues):
 * https://www.carc.usc.edu/user-information/user-guides/hpc-basics/discovery-resources
 Storage Areas:
-https://www.carc.usc.edu/user-information/user-guides/data-management/storage-file-systems
+* https://www.carc.usc.edu/user-information/user-guides/data-management/storage-file-systems
 Intro to scientific computing:

← Older revision		Revision as of 19:28, 16 November 2022
Line 1:		Line 1:
		+	== Background Infor and Resources ==
		+	Confirm User is Added to SCEC Allocation:
		+	Create /project Storage /project/scec_608/<username>
		+
		+	CARC System Overview:
		+	* https://www.carc.usc.edu/user-information/user-guides/hpc-basics/discovery-resources
		+
		+	Computing Hardware Types:
		+
		+	Storage Areas:
		+	https://www.carc.usc.edu/user-information/user-guides/data-management/storage-file-systems
		+
		+	Job Submission Queues:
		+
		+	Intro to scientific computing:
		+	*https://software-carpentry.org/lessons/
		+	*https://swcarpentry.github.io/shell-novice/
		+	*https://www.tutorialspoint.com/how-to-use-nano-text-editor
		+
		+	Starting a Project group at CARC:
		+	* https://www.carc.usc.edu/user-information/getting-started
		+
	== Overview of Installing UCVM on Discovery ==		== Overview of Installing UCVM on Discovery ==
	1) Confirm USC CARC Discovery account and allocation access		1) Confirm USC CARC Discovery account and allocation access

@@ Line 28: / Line 28: @@
 ) Update .bashrc to specific required compilers, and add path to ucvm setup script (which is not yet installed)
 ) logout and log in and confirm correct environment (python gcc)
-) in ucvm22_src clone dev branch of ucvm (contains all available models)
+) in ucvm227_src clone dev branch of ucvm (contains all available models)
-* git clone -b basin https://github.com/SCECcode/ucvm.git
+* git clone https://github.com/SCECcode/ucvm.git
 a.) move into largefiles and run get_largefiles.py, and stage_largefiles.py, and then ucvm_setup.py
@@ Line 38: / Line 45: @@
 ) when prompted specify installation of binary directory for ucvm
-* e.g. /project/scec_608/maechlin/ucvm22
+* e.g. /project/scec_608/maechlin/ucvm227
 ) when prompted, answer yes to all the velocity models available
@@ Line 45: / Line 52: @@
 ) move to test_ucvm directory and confirm ucvm_query runs from test_ucvm, and ucvm_query -H lists all the velocity models
 ) install conda python2 virtual environment and plotting libraries
 ** [[https://github.com/SCECcode/ucvm_plotting/wiki/Installation ucvm_plotting]]
-) move to ucvm22 bin directory and clone ucvm_plotting
+) move to ucvm227 bin directory and clone ucvm_plotting
 * git clone https://github.com/ucvm_plotting.git

@@ Line 8: / Line 8: @@
 ) ssh into Discovery - Use keepalive to avoid frequent logouts
-* ssh -o "ServerAliveInterval 60" username@discovery.usc.edu
+* ssh -o "ServerAliveInterval 60" username@discovery2.usc.edu
 ) select locations for 3 directories, working, src, and binary
 * /home1/maechlin/test_ucvm
-* /project/scec_608/maechlin/ucvm22_src
+* /project/scec_608/maechlin/ucvm227_src
-* /project/scec_608/maechlin/ucvm22
+* /project/scec_608/maechlin/ucvm227
 ) Install or Update anaconda in Discovery account
@@ Line 19: / Line 19: @@
 * In not using conda, Install anaconda
 ** copy anaconda from my account on projects
-** in test_ucvm_directory, run cp /project/scec_608/maechlin/Anaconda3-2022.05-Linux-x86_64.sh .
+** in test_ucvm_directory, run cp /project/scec_608/maechlin/Anaconda3-2022.10-Linux-x86_64.sh .
 ** chmod +x *.sh
-** ./Anaconda3-2022.05-Linux-x86_64.sh
+** ./Anaconda3-2022.10-Linux-x86_64.sh
 ** when asked for installation directory give directory like
 ** /project/scec_608/maechlin/anaconda3

@@ Line 61: / Line 61: @@
 ) transfer plots to local computer using OnDemand
+== Recording of UCVM Installation Process ==
 == Detailed Instructions for Installation on discovery.usc.edu ==