Difference between revisions of "UCVM svm1d and elygtl"

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Line 6: Line 6:
 
the mpi corner configuration ordering :  
 
the mpi corner configuration ordering :  
  
−
   C1=E1, C2=E3, C3=E4 and C4=E2
+
   mpi-pt0=C1, mpi-pt1=C2, mpi-pt2=C3 and mpi-pt3=C4
  
 
{|
 
{|
Line 44: Line 44:
 
*  
 
*  
 
[http://hypocenter.usc.edu/research/ucvmc_result/svmgtl/mpi_Elnaz_case33_cvms5_GTL_0.5hz_10pts_1000ms.e small 1000ms case3 with GTL]
 
[http://hypocenter.usc.edu/research/ucvmc_result/svmgtl/mpi_Elnaz_case33_cvms5_GTL_0.5hz_10pts_1000ms.e small 1000ms case3 with GTL]
 +
 +
<pre>
 +
#!/bin/sh 
 +
 +
#Request for etree
 +
#From:  Esmaeilzadeh Seylabi, Elnaz <Elnaze@unr.edu>
 +
 +
 +
etree_go () {
 +
  sbatch ${SLURM_EXTRACT_SCRIPT}
 +
}
 +
 +
etree_slurm() {
 +
 +
scriptfile=./${SLURM_EXTRACT_SCRIPT}
 +
 +
/bin/cat >$scriptfile << EEND
 +
#!/bin/bash
 +
#SBATCH --ntasks=65
 +
#SBATCH -N 65
 +
#SBATCH --mem 0 # Set to unlimited memory
 +
#SBATCH --time=24:00:00
 +
#SBATCH -o ${PWD}/mpi_${LABEL}_${GTL}_extract_etree.out
 +
#SBATCH -e ${PWD}/mpi_${LABEL}_${GTL}_extract_etree.err
 +
#SBATCH --export=NONE
 +
#SBATCH --mail-user=mei@usc.edu
 +
#SBATCH --mail-type=END
 +
 +
source /home/scec-00/mei/setup_env_proj.sh
 +
 +
###############################################################################
 +
 +
cp ${UCVM_INSTALL}/bin/ucvm2etree_extract_MPI .
 +
cp ${UCVM_INSTALL}/conf/ucvm.conf .
 +
 +
srun -v --mpi=pmi2 ./ucvm2etree_extract_MPI -f ${PWD}/${ETREE_CONFIG}
 +
sbatch ${SLURM_SORT_SCRIPT}
 +
 +
EEND
 +
 +
scriptfile=./${SLURM_SORT_SCRIPT}
 +
 +
/bin/cat >$scriptfile << EEEND
 +
#!/bin/bash
 +
#SBATCH --ntasks=64
 +
#SBATCH -N 64
 +
#SBATCH --mem 0 # Set to unlimited memory
 +
#SBATCH --time=22:00:00
 +
#SBATCH -o ${PWD}/mpi_${LABEL}_${GTL}_sort_etree.out
 +
#SBATCH -e ${PWD}/mpi_${LABEL}_${GTL}_sort_etree.err
 +
#SBATCH --export=NONE
 +
#SBATCH --mail-user=mei@usc.edu
 +
#SBATCH --mail-type=END
 +
 +
source /home/scec-00/mei/setup_env_proj.sh
 +
 +
###############################################################################
 +
 +
cp ${UCVM_INSTALL}/bin/ucvm2etree_sort_MPI .
 +
cp ${UCVM_INSTALL}/conf/ucvm.conf .
 +
 +
srun -v --mpi=pmi2 ./ucvm2etree_sort_MPI -f ${PWD}/${ETREE_CONFIG}
 +
sbatch ${SLURM_MERGE_SCRIPT}
 +
 +
EEEND
 +
 +
scriptfile=./${SLURM_MERGE_SCRIPT}
 +
 +
/bin/cat >$scriptfile << EEEEND
 +
#!/bin/bash
 +
#SBATCH --ntasks=64
 +
#SBATCH -N 64
 +
#SBATCH --mem 0 # Set to unlimited memory
 +
#SBATCH --time=22:00:00
 +
#SBATCH -o ${PWD}/mpi_${LABEL}_${GTL}_merge_etree.out
 +
#SBATCH -e ${PWD}/mpi_${LABEL}_${GTL}_merge_etree.err
 +
#SBATCH --export=NONE
 +
#SBATCH --mail-user=mei@usc.edu
 +
#SBATCH --mail-type=END
 +
 +
source /home/scec-00/mei/setup_env_proj.sh
 +
 +
###############################################################################
 +
 +
cp ${UCVM_INSTALL}/bin/ucvm2etree_merge_MPI .
 +
cp ${UCVM_INSTALL}/conf/ucvm.conf .
 +
 +
srun -v --mpi=pmi2 ./ucvm2etree_merge_MPI -f ${PWD}/${ETREE_CONFIG}
 +
 +
EEEEND
 +
}
 +
 +
## generate the etree.conf
 +
etree_foo() {
 +
 +
configfile=./${ETREE_CONFIG}
 +
/bin/cat >$configfile << END
 +
 +
#
 +
# ${DATE}
 +
#
 +
# ${ETREE_CONFIG}
 +
#
 +
 +
proj=geo-bilinear
 +
lon_0=-116.8593
 +
lat_0=33.6403
 +
 +
lon_1=-116.6431
 +
lat_1=33.7976
 +
 +
lon_2=-116.2902
 +
lat_2=33.4567
 +
 +
lon_3=-116.5062
 +
lat_3=33.3000
 +
 +
# Domain dimensions (meters):
 +
y-size=26562.5000
 +
x-size=50000.0000
 +
z-size=25000.0000
 +
 +
# Max freq, points per wavelength, Vs min
 +
max_freq=${MAX_FREQ}
 +
ppwl=${PPWL}
 +
vs_min=${VS_MIN}
 +
 +
# Blocks partition parameters:
 +
ny=17
 +
nx=32
 +
 +
# Max allowed size of octants in meters
 +
max_octsize=10000.0
 +
 +
# Etree parameters and info
 +
title=case3_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms
 +
author=Mei_Hui_Su4Elnza
 +
date=09/2019
 +
outputfile=${PWD}/mpi_${LABEL}_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MN}ms.e
 +
format=etree
 +
 +
# UCVM parameters
 +
#ucvmstr=${MODEL},svm:svm1d
 +
#ucvm_interp_zrange=Z1
 +
ucvmstr=${MODEL},elygtl:ely
 +
ucvm_interp_zrange=0.0,350.0
 +
ucvmconf=${UCVM_INSTALL}/conf/ucvm.conf
 +
 +
# Scratch
 +
scratch=${PWD}/scratch_case33
 +
 +
#
 +
# Buffering parameters
 +
#
 +
# Etree buffer size in MB
 +
buf_etree_cache=128
 +
# Max octants to buffer for flat file during extraction
 +
buf_extract_mem_max_oct=4194304
 +
# Max octants to save in flat file before reporting full during extraction
 +
buf_extract_ffile_max_oct=40000000
 +
# Max octants to read from input flat file during sorting
 +
buf_sort_ffile_max_oct=40000000
 +
# Minimum number of octants between reports during merging
 +
buf_merge_report_min_oct=10000000
 +
# MPI send/recv octant buffer size during merging
 +
#buf_merge_sendrecv_buf_oct=4096
 +
buf_merge_sendrecv_buf_oct=4096
 +
# Etree read/write octant buffer size during merging
 +
#buf_merge_io_buf_oct=4194304
 +
buf_merge_io_buf_oct=8388608
 +
 +
 +
END
 +
}
 +
 +
##
 +
#label,MODEL,GTL,MAX_FREQ,PPWL,VS_MIN
 +
#
 +
#Elnaz,cvms5,GTL,5,10,200
 +
#Elnaz,cvms5,SVM,5,10,200
 +
#
 +
 +
UCVM_INSTALL="/home/scec-00/mei/ucvmc_19_4/install"
 +
DATE=`date`
 +
 +
input="case_input.txt"
 +
while IFS= read -r file; do
 +
  arrData=(${file//,/ })
 +
  [[ $arrData =~ ^#.* ]] && continue
 +
  LABEL=${arrData[0]}_case33
 +
  MODEL=${arrData[1]}
 +
  GTL=${arrData[2]}
 +
  MAX_FREQ=${arrData[3]}
 +
  PPWL=${arrData[4]}
 +
  VS_MIN=${arrData[5]}
 +
  ETREE_CONFIG=mpi_${LABEL}_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms.conf
 +
  SLURM_EXTRACT_SCRIPT=mpi_${LABEL}_${GTL}_extract_etree.slurm
 +
  SLURM_SORT_SCRIPT=mpi_${LABEL}_${GTL}_sort_etree.slurm
 +
  SLURM_MERGE_SCRIPT=mpi_${LABEL}_${GTL}_merge_etree.slurm
 +
  PWD=`pwd`
 +
 +
  etree_foo
 +
  etree_slurm
 +
  etree_go
 +
 +
done < "$input"
 +
 +
 +
</pre>
  
 
== GTL ==
 
== GTL ==

Latest revision as of 04:53, 27 September 2019

New Data

Specifications:

the mpi corner configuration ordering : 

  mpi-pt0=C1, mpi-pt1=C2, mpi-pt2=C3 and mpi-pt3=C4
case1 case2
case3


with elygtl,

GTL case 1
GTL case 2
GTL case 3

with svm,

SVM case 3

etrees,

small 1000ms case3 with GTL 

#!/bin/sh  

#Request for etree
#From:   Esmaeilzadeh Seylabi, Elnaz <Elnaze@unr.edu>


etree_go () {
   sbatch ${SLURM_EXTRACT_SCRIPT}
}

etree_slurm() {

scriptfile=./${SLURM_EXTRACT_SCRIPT}

/bin/cat >$scriptfile << EEND 
#!/bin/bash
#SBATCH --ntasks=65
#SBATCH -N 65 
#SBATCH --mem 0 # Set to unlimited memory
#SBATCH --time=24:00:00 
#SBATCH -o ${PWD}/mpi_${LABEL}_${GTL}_extract_etree.out
#SBATCH -e ${PWD}/mpi_${LABEL}_${GTL}_extract_etree.err
#SBATCH --export=NONE 
#SBATCH --mail-user=mei@usc.edu
#SBATCH --mail-type=END

source /home/scec-00/mei/setup_env_proj.sh

###############################################################################

cp ${UCVM_INSTALL}/bin/ucvm2etree_extract_MPI .
cp ${UCVM_INSTALL}/conf/ucvm.conf .

srun -v --mpi=pmi2 ./ucvm2etree_extract_MPI -f ${PWD}/${ETREE_CONFIG}
sbatch ${SLURM_SORT_SCRIPT}

EEND

scriptfile=./${SLURM_SORT_SCRIPT}

/bin/cat >$scriptfile << EEEND 
#!/bin/bash
#SBATCH --ntasks=64
#SBATCH -N 64 
#SBATCH --mem 0 # Set to unlimited memory
#SBATCH --time=22:00:00 
#SBATCH -o ${PWD}/mpi_${LABEL}_${GTL}_sort_etree.out
#SBATCH -e ${PWD}/mpi_${LABEL}_${GTL}_sort_etree.err
#SBATCH --export=NONE 
#SBATCH --mail-user=mei@usc.edu
#SBATCH --mail-type=END

source /home/scec-00/mei/setup_env_proj.sh

###############################################################################

cp ${UCVM_INSTALL}/bin/ucvm2etree_sort_MPI .
cp ${UCVM_INSTALL}/conf/ucvm.conf .

srun -v --mpi=pmi2 ./ucvm2etree_sort_MPI -f ${PWD}/${ETREE_CONFIG}
sbatch ${SLURM_MERGE_SCRIPT}

EEEND

scriptfile=./${SLURM_MERGE_SCRIPT}

/bin/cat >$scriptfile << EEEEND 
#!/bin/bash
#SBATCH --ntasks=64
#SBATCH -N 64 
#SBATCH --mem 0 # Set to unlimited memory
#SBATCH --time=22:00:00 
#SBATCH -o ${PWD}/mpi_${LABEL}_${GTL}_merge_etree.out
#SBATCH -e ${PWD}/mpi_${LABEL}_${GTL}_merge_etree.err
#SBATCH --export=NONE 
#SBATCH --mail-user=mei@usc.edu
#SBATCH --mail-type=END

source /home/scec-00/mei/setup_env_proj.sh

###############################################################################

cp ${UCVM_INSTALL}/bin/ucvm2etree_merge_MPI .
cp ${UCVM_INSTALL}/conf/ucvm.conf .

srun -v --mpi=pmi2 ./ucvm2etree_merge_MPI -f ${PWD}/${ETREE_CONFIG}

EEEEND
}

## generate the etree.conf
etree_foo() {

configfile=./${ETREE_CONFIG}
/bin/cat >$configfile << END 

#
# ${DATE}
#
# ${ETREE_CONFIG}
#

proj=geo-bilinear 
lon_0=-116.8593
lat_0=33.6403

lon_1=-116.6431
lat_1=33.7976

lon_2=-116.2902
lat_2=33.4567

lon_3=-116.5062
lat_3=33.3000

# Domain dimensions (meters):
y-size=26562.5000
x-size=50000.0000 
z-size=25000.0000

# Max freq, points per wavelength, Vs min
max_freq=${MAX_FREQ}
ppwl=${PPWL}
vs_min=${VS_MIN}

# Blocks partition parameters:
ny=17
nx=32
 
# Max allowed size of octants in meters
max_octsize=10000.0

# Etree parameters and info
title=case3_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms
author=Mei_Hui_Su4Elnza
date=09/2019
outputfile=${PWD}/mpi_${LABEL}_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MN}ms.e
format=etree 

# UCVM parameters
#ucvmstr=${MODEL},svm:svm1d
#ucvm_interp_zrange=Z1
ucvmstr=${MODEL},elygtl:ely
ucvm_interp_zrange=0.0,350.0
ucvmconf=${UCVM_INSTALL}/conf/ucvm.conf

# Scratch
scratch=${PWD}/scratch_case33

#
# Buffering parameters
#
# Etree buffer size in MB
buf_etree_cache=128
# Max octants to buffer for flat file during extraction
buf_extract_mem_max_oct=4194304
# Max octants to save in flat file before reporting full during extraction
buf_extract_ffile_max_oct=40000000
# Max octants to read from input flat file during sorting
buf_sort_ffile_max_oct=40000000
# Minimum number of octants between reports during merging
buf_merge_report_min_oct=10000000
# MPI send/recv octant buffer size during merging
#buf_merge_sendrecv_buf_oct=4096
buf_merge_sendrecv_buf_oct=4096
# Etree read/write octant buffer size during merging
#buf_merge_io_buf_oct=4194304
buf_merge_io_buf_oct=8388608


END
}

##
#label,MODEL,GTL,MAX_FREQ,PPWL,VS_MIN
#
#Elnaz,cvms5,GTL,5,10,200
#Elnaz,cvms5,SVM,5,10,200
#

UCVM_INSTALL="/home/scec-00/mei/ucvmc_19_4/install"
DATE=`date`

input="case_input.txt"
while IFS= read -r file; do
  arrData=(${file//,/ })
  [[ $arrData =~ ^#.* ]] && continue
  LABEL=${arrData[0]}_case33
  MODEL=${arrData[1]}
  GTL=${arrData[2]}
  MAX_FREQ=${arrData[3]}
  PPWL=${arrData[4]}
  VS_MIN=${arrData[5]}
  ETREE_CONFIG=mpi_${LABEL}_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms.conf
  SLURM_EXTRACT_SCRIPT=mpi_${LABEL}_${GTL}_extract_etree.slurm
  SLURM_SORT_SCRIPT=mpi_${LABEL}_${GTL}_sort_etree.slurm
  SLURM_MERGE_SCRIPT=mpi_${LABEL}_${GTL}_merge_etree.slurm
  PWD=`pwd`

  etree_foo
  etree_slurm
  etree_go

done < "$input"

GTL

Exploring UCVMC's external gtl and interp function usage

  • elygtl
  • svm

depth profiles

Target point: -118.4,34 

echo "-118.4 34.0 " | basin_query -m cvms5 -f ../conf/ucvm.conf

returns the Z1.0 at 580.0


Profile plots,


cvms5 background
cvms5 baseline
cvms5 with elygtl -z 0,200
cvms5 with elygtl -z 0,350
cvms5 with elygtl -Z 1000
cvms5 with svmgtl -z 0,200
cvms5 with svmgtl -z 0,350
cvms5 with svmgtl -Z 1000

commands used : 

./plot_depth_profile.py -s 34,-118.4 -b 0  -e 40000 -d vs,vp,density -v 100 -c cvms5 -o cvms5_depth_nogtl_bkg.png
./plot_depth_profile.py -s 34,-118.4 -b 0  -e 500 -d vs -v 10 -c cvms5 -o cvms5_depth_nogtl_base.png
./plot_depth_profile.py -s 34,-118.4 -b 0  -e 500 -d vs -v 10 -c cvms5,elygtl:ely -z 0,200 -o cvms5_depth_elygtl_200.png
./plot_depth_profile.py -s 34,-118.4 -b 0  -e 500 -d vs -v 10 -c cvms5,elygtl:ely -z 0,350 -o cvms5_depth_nogtl_elygtl_350.png
./plot_depth_profile.py -s 34,-118.4 -b 0  -e 500 -d vs -v 10 -c cvms5,elygtl:ely -Z 1000 -o cvms5_depth_nogtl_elygtl_Z1.png
./plot_depth_profile.py -s 34,-118.4 -b 0  -e 500 -d vs -v 10 -c cvms5,svmgtl:svm -z 0,200 -o cvms5_depth_nogtl_svmgtl_200.png
./plot_depth_profile.py -s 34,-118.4 -b 0  -e 500 -d vs -v 10 -c cvms5,svmgtl:svm -z 0,350 -o cvms5_depth_nogtl_svmgtl_350.png
./plot_depth_profile.py -s 34,-118.4 -b 0  -e 500 -d vs -v 10 -c cvms5,svmgtl:svm -Z 1000 -o cvms5_depth_nogtl_svmgtl_Z1.png


Elevation profile plot,

cvms5 background
cvms5 baseline
cvms5 with elygtl -z 0,200
cvms5 with elygtl -z 0,350
cvms5 with elygtl -Z 1000
cvms5 with svmgtl -z 0,200
cvms5 with svmgtl -z 0,350
cvms5 with svmgtl -Z 1000

Commands used: 

./plot_elevation_profile.py -s 34,-118.4 -b 1000  -e -3000 -d vs,vp,density -v 100 -c cvms5 -o cvms5_edepth_nogtl_bkg.png
./plot_elevation_profile.py -s 34,-118.4 -b 200  -e -300 -d vs -v -10 -c cvms5 -o cvms5_edepth_nogtl_base.png
./plot_elevation_profile.py -s 34,-118.4 -b 200  -e -300 -d vs -v -10 -c cvms5,elygtl:ely -z 0,200 -o cvms5_edepth_nogtl_elygtl_200.png
./plot_elevation_profile.py -s 34,-118.4 -b 200  -e -300 -d vs -v -10 -c cvms5,elygtl:ely -z 0,350 -o cvms5_edepth_nogtl_elygtl_350.png
./plot_elevation_profile.py -s 34,-118.4 -b 200  -e -300 -d vs -v -10 -c cvms5,elygtl:ely -Z 1000 -o cvms5_edepth_nogtl_elygtl_Z1.png
./plot_elevation_profile.py -s 34,-118.4 -b 200  -e -300 -d vs -v -10 -c cvms5,svmgtl:svm -z 0,200 -o cvms5_edepth_nogtl_svmgtl_200.png
./plot_elevation_profile.py -s 34,-118.4 -b 200  -e -300 -d vs -v -10 -c cvms5,svmgtl:svm -z 0,350 -o cvms5_edepth_nogtl_svmgtl_350.png
./plot_elevation_profile.py -s 34,-118.4 -b 200  -e -300 -d vs -v -10 -c cvms5,svmgtl:svm -Z 1000 -o cvms5_edepth_nogtl_svmgtl_Z1.png


Raw Datafiles

Somewhere by the water

Near westside with cvms5, internal GTL disabled,


cvms5 Z10 map
cvms5 Z25 map

Depth cross plot,

commands used : 

./plot_cross_section.py -b 34,-118.5 -u 34,-117.5 -h 500 -v 10 -d vs -c cvms5 -a d -s 0 -e 500 -o cvms5_cross_nogtl_base.png

and, 

./plot_cross_section.py -b 34,-118.5 -u 34,-117.5 -h 500 -v 10 -d vs -c cvms5,svmgtl:svm -a d -Z 1000 -s 0 -e 500 -o cvms5_cross_nogtl_svmgtl_Z1.png


cvms5 background
cvms5 baseline
cvms5 with elygtl -z 0,200
cvms5 with elygtl -z 0,350
cvms5 with elygtl -Z 1000
cvms5 with svmgtl -z 0,200
cvms5 with svmgtl -z 0,350
cvms5 with svmgtl -Z 1000

Elevation cross plot, Commands used: 

./plot_elevation_cross_section.py -b 34,-118.5 -u 34,-117.5 -h 500 -v -10 -d vs -c cvms5 -a d -s 200 -e -300 -o cvms5_ecross_nogtl_base.png

and, 

./plot_elevation_cross_section.py -b 34,-118.5 -u 34,-117.5 -h 500 -v -10 -d vs -c cvms5,svmgtl:svm -a d  -Z 1000  -s 200 -e -300 -o cvms5_ecross_nogtl_svmgtl_Z1.png
cvms5 background
cvms5 baseline
cvms5 with elygtl -z 0,200
cvms5 with elygtl -z 0,350
cvms5 with elygtl -Z 1000
cvms5 with svmgtl -z 0,200
cvms5 with svmgtl -z 0,350
cvms5 with svmgtl -Z 1000

Raw Datafiles

Somewhere near Garner Valley

# gv
LOC='-b 33.40,-116.859 -u 33.80,-116.30'

./plot_horizontal_slice.py ${LOC} -e 50 -d vs -c cvms5 -a dd -s 0.001 -o gv_cvms5_vs_50.png
./plot_horizontal_slice.py ${LOC} -e 50 -d vs -c cvms5,svmgtl:svm -Z 1000 -a dd -s 0.001 -o gv_cvms5_svm_vs_50.png
./plot_z10_map.py ${LOC} -c cvms5 -a dd -s 0.001 -o gv_cvms5_Z10.png
./plot_z25_map.py ${LOC} -c cvms5 -a dd -s 0.001 -o gv_cvms5_Z25.png
cvms5 Z10
cvms5 Z25
cvms5
cvms5 with svmgtl

Related Links

Retrieved from "https://strike.scec.org/scecwiki/index.php?title=UCVM_svm1d_and_elygtl&oldid=23242"