Difference between revisions of "UCVM install on Frontera"

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(Created page with "== Frontera environment == Do not need additional environment setup steps Default Modules : Currently Loaded Modules: 1) intel/19.1.1 3) git/2.24.1 5) python3/3.7....")
 
 
(10 intermediate revisions by the same user not shown)
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== Frontera environment ==
 
== Frontera environment ==
  
−
Do not need additional environment setup steps
+
Does not need any additional environment setup
  
 
Default Modules :
 
Default Modules :
Line 8: Line 8:
 
   1) intel/19.1.1  3) git/2.24.1      5) python3/3.7.0  7) pmix/3.1.4      9) xalt/2.10.34
 
   1) intel/19.1.1  3) git/2.24.1      5) python3/3.7.0  7) pmix/3.1.4      9) xalt/2.10.34
 
   2) impi/19.0.9    4) autotools/1.2  6) cmake/3.24.2    8) hwloc/1.11.12  10) TACC
 
   2) impi/19.0.9    4) autotools/1.2  6) cmake/3.24.2    8) hwloc/1.11.12  10) TACC
−
 
  
 
== Script to build UCVM ==
 
== Script to build UCVM ==
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Copy the script below to your home directory.
 
Copy the script below to your home directory.
  
−
Replace <<YOUR_BUILD_LOCATION>> in the script and point to your
+
Replace <<YOUR_BUILD_LOCATION>> in the script to point to your
 
big scratch location(either scratch1 or scratch2)
 
big scratch location(either scratch1 or scratch2)
  
−
 
−
chmod +x script
 
−
 
−
and
 
−
 
−
source ./script
 
  
 
<pre>
 
<pre>
−
 
 
#!/bin/bash
 
#!/bin/bash
  
−
export MY_TOP=<<YOUR_BUILD_LOCATION>>/scratch1
+
export MY_TOP=<<YOUR_BUILD_LOCATION>>
  
 
export TOP_UCVM_TARGET=$MY_TOP/TARGET_UCVM
 
export TOP_UCVM_TARGET=$MY_TOP/TARGET_UCVM
Line 38: Line 30:
  
 
cd $TOP_UCVM_TARGET
 
cd $TOP_UCVM_TARGET
−
#git clone https://github.com/SCECcode/ucvm.git
 
 
git clone https://github.com/SCECcode/ucvm.git -b withSCPBR
 
git clone https://github.com/SCECcode/ucvm.git -b withSCPBR
  
Line 66: Line 57:
  
 
</pre>
 
</pre>
 +
 +
 +
Run the script to build your UCVM installation,
 +
 +
<pre>
 +
chmod +x script
 +
source ./script
 +
</pre>
 +
 
== Test your UCVM installation ==
 
== Test your UCVM installation ==
  
 
setup your UCVM enabled environment,
 
setup your UCVM enabled environment,
 
<pre>
 
<pre>
−
source <<YOUR_BUILD_LOCATION>>/scratch1/TARGET_UCVM/ucvm_install/conf/ucvm_env.sh
+
source <<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm_install/conf/ucvm_env.sh
 
</pre>
 
</pre>
  
−
Your $UCVM_INSTAlL_PATH is now set to <<YOUR_BUILD_LOCATION>>/scratch1/TARGET_UCVM/ucvm_install
+
Your $UCVM_INSTAlL_PATH is now set to "<<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm_install"<br>
−
and your $UCVM_SRC_PATH is set to <<YOUR_BUILD_LOCATION>>/scratch1/TARGET_UCVM/ucvm
+
and your $UCVM_SRC_PATH is set to "<<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm"
  
 
To check if your ucvm environment is setup properly,
 
To check if your ucvm environment is setup properly,
Line 87: Line 87:
 
ucvm_query -H
 
ucvm_query -H
 
</pre>
 
</pre>
 +
 +
and it should return,
 +
 +
<pre>
 +
Usage: ucvm_query [-m models<:ifunc>] [-p user_map] [-c coordtype] [-f config] [-z zmin,zmax] [-b] < file.in
 +
 +
Flags:
 +
-h This help message.
 +
-H Detail help message.
 +
-m Comma delimited list of crustal/GTL models to query in order
 +
  of preference. GTL models may optionally be suffixed with ':ifunc'
 +
  to specify interpolation function.
 +
-c Z coordinate mode: geo-depth (gd, default), geo-elev (ge).
 +
-f Configuration file. Default is ./ucvm.conf.
 +
-p User-defined map to use for elevation and vs30 data.
 +
-v Display model version information only.
 +
-z Optional depth range for gtl/crust interpolation.
 +
 +
-b Optional output in json format
 +
 +
-l Optional input lat,lon,Z(depth/elevation)
 +
 +
-L Optional interpolation floor limit vs,vp,density(meter in depth mode)
 +
 +
Input format is:
 +
lon lat Z
 +
 +
Output format is:
 +
lon lat Z surf vs30 crustal cr_vp cr_vs cr_rho gtl gtl_vp gtl_vs gtl_rho cmb_algo cmb_vp cmb_vs cmb_rho
 +
 +
Notes:
 +
- If running interactively, type Cntl-D to end input coord list.
 +
 +
Version: 22.7.0
 +
 +
Installed Resources:
 +
          1d : crustal model
 +
      bbp1d : crustal model
 +
    cmuetree : crustal model
 +
      1dgtl : gtl
 +
      elygtl : gtl
 +
        cvmh : crustal model
 +
      cencal : crustal model
 +
      cvms5 : crustal model
 +
      cvmsi : crustal model
 +
        cvms : crustal model
 +
        ely : ifunc
 +
      taper : ifunc
 +
        ucvm : map
 +
        yong : map
 +
model_etree : model i/f
 +
model_patch : model i/f
 +
  map_etree : map i/fand it should return,
 +
 +
</pre>
 +
  
 
Using a test file from UCVM regression suite,
 
Using a test file from UCVM regression suite,
Line 116: Line 172:
  
 
== Related Links ==
 
== Related Links ==
−
*[[UCVM Notes]]
+
*[[Main Page]]
 +
*[[UCVM]]

Latest revision as of 18:37, 28 March 2023

Frontera environment

Does not need any additional environment setup

Default Modules :

Currently Loaded Modules: 

 1) intel/19.1.1   3) git/2.24.1      5) python3/3.7.0   7) pmix/3.1.4      9) xalt/2.10.34
 2) impi/19.0.9    4) autotools/1.2   6) cmake/3.24.2    8) hwloc/1.11.12  10) TACC

Script to build UCVM

Copy the script below to your home directory.

Replace <<YOUR_BUILD_LOCATION>> in the script to point to your big scratch location(either scratch1 or scratch2) 


#!/bin/bash

export MY_TOP=<<YOUR_BUILD_LOCATION>>

export TOP_UCVM_TARGET=$MY_TOP/TARGET_UCVM
export UCVM_SRC_PATH=$TOP_UCVM_TARGET/ucvm
export UCVM_INSTALL_PATH=$TOP_UCVM_TARGET/ucvm_install

rm -rf $TOP_UCVM_TARGET
mkdir $TOP_UCVM_TARGET

cd $TOP_UCVM_TARGET
git clone https://github.com/SCECcode/ucvm.git -b withSCPBR


# all available velocity models in this UCVM branch
#
#cvmh,cencal,cca,cs173,cs173h,albacore,cvlsu,ivlsu,wfcvm
#cvms,cvms5,cvmsi
#cvmhibbn,cvmhlabn,cvmhrbn,cvmhsbbn,cvmhsbcbn,cvmhsgbn,cvmhsmbn,cvmhstbn,cvmhvbn
#sjcz
#

cd $UCVM_SRC_PATH/largefiles
# select the models to build/install
./get_largefiles.py -m cvmsi,cvms5,cvmh,cvms,cencal

cd $UCVM_SRC_PATH/largefiles; ./check_largefiles_md5.py
cd $UCVM_SRC_PATH/largefiles; ./stage_largefiles.py

cd $UCVM_SRC_PATH
./ucvm_setup.py -d -a -p $UCVM_INSTALL_PATH &> ucvm_setup_install.log

cd $UCVM_SRC_PATH; make check

echo "..EXITING.."
exit


Run the script to build your UCVM installation, 

chmod +x script
source ./script

Test your UCVM installation

setup your UCVM enabled environment, 

source <<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm_install/conf/ucvm_env.sh

Your $UCVM_INSTAlL_PATH is now set to "<<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm_install"
and your $UCVM_SRC_PATH is set to "<<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm"

To check if your ucvm environment is setup properly, 

which ucvm_query

Following command will show what is available in this UCVM installation, 

ucvm_query -H

and it should return, 

Usage: ucvm_query [-m models<:ifunc>] [-p user_map] [-c coordtype] [-f config] [-z zmin,zmax] [-b] < file.in

Flags:
	-h This help message.
	-H Detail help message.
	-m Comma delimited list of crustal/GTL models to query in order
	   of preference. GTL models may optionally be suffixed with ':ifunc'
	   to specify interpolation function.
	-c Z coordinate mode: geo-depth (gd, default), geo-elev (ge).
	-f Configuration file. Default is ./ucvm.conf.
	-p User-defined map to use for elevation and vs30 data.
	-v Display model version information only.
	-z Optional depth range for gtl/crust interpolation.

	-b Optional output in json format

	-l Optional input lat,lon,Z(depth/elevation)

	-L Optional interpolation floor limit vs,vp,density(meter in depth mode)

Input format is:
	lon lat Z

Output format is:
	lon lat Z surf vs30 crustal cr_vp cr_vs cr_rho gtl gtl_vp gtl_vs gtl_rho cmb_algo cmb_vp cmb_vs cmb_rho

Notes:
	- If running interactively, type Cntl-D to end input coord list.

Version: 22.7.0

Installed Resources:
          1d : crustal model
       bbp1d : crustal model
    cmuetree : crustal model
       1dgtl : gtl
      elygtl : gtl
        cvmh : crustal model
      cencal : crustal model
       cvms5 : crustal model
       cvmsi : crustal model
        cvms : crustal model
         ely : ifunc
       taper : ifunc
        ucvm : map
        yong : map
 model_etree : model i/f
 model_patch : model i/f
   map_etree : map i/fand it should return,


Using a test file from UCVM regression suite, 

-118.0 34.0 0.0
-118.0 34.0 50.0
-118.0 34.0 100.0
-118.0 34.0 500.0
-118.0 34.0 1000.0

Calling ucvm_query to query cvmsi model and interpolate it with the taper algorithm, 

ucvm_query -m cvmsi,elygtl:taper -f $UCVM_INSTALL_PATH/conf/ucvm.conf < $UCVM_INSTALL_PATH/tests/inputs/test_latlons.txt

should return, 

Using Geo Depth coordinates as default mode.
 -118.0000    34.0000      0.000    284.191    580.043      cvmsi   3035.433   1719.851   2402.684     elygtl      0.000    580.043      0.000      taper   1700.000    500.000   1974.976
 -118.0000    34.0000     50.000    284.191    580.043      cvmsi   3035.433   1719.851   2402.684     elygtl      0.000    580.043      0.000      taper   1700.000    548.000   2128.620
 -118.0000    34.0000    100.000    284.191    580.043      cvmsi   3035.433   1719.851   2402.684     elygtl      0.000    580.043      0.000      taper   1700.000    603.470   2130.773
 -118.0000    34.0000    500.000    284.191    580.043      cvmsi   3035.433   1719.851   2402.684     elygtl      0.000    580.043      0.000      taper   2701.194   1475.595   2354.105
 -118.0000    34.0000   1000.000    284.191    580.043      cvmsi   3330.891   1945.586   2443.042       none      0.000      0.000      0.000      crust   3330.891   1945.586   2443.042

Related Links

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