Difference between revisions of "UCVM install on Frontera"
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Copy the script below to your home directory. | Copy the script below to your home directory. | ||
| − | Replace <<YOUR_BUILD_LOCATION>> in the script | + | Replace <<YOUR_BUILD_LOCATION>> in the script to point to your |
big scratch location(either scratch1 or scratch2) | big scratch location(either scratch1 or scratch2) | ||
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| − | |||
| − | |||
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#!/bin/bash | #!/bin/bash | ||
| − | export MY_TOP=<<YOUR_BUILD_LOCATION>> | + | export MY_TOP=<<YOUR_BUILD_LOCATION>> |
export TOP_UCVM_TARGET=$MY_TOP/TARGET_UCVM | export TOP_UCVM_TARGET=$MY_TOP/TARGET_UCVM | ||
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exit | exit | ||
| + | </pre> | ||
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| + | |||
| + | Run the script to build your UCVM installation, | ||
| + | |||
| + | <pre> | ||
| + | chmod +x script | ||
| + | source ./script | ||
</pre> | </pre> | ||
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setup your UCVM enabled environment, | setup your UCVM enabled environment, | ||
<pre> | <pre> | ||
| − | source <<YOUR_BUILD_LOCATION>> | + | source <<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm_install/conf/ucvm_env.sh |
</pre> | </pre> | ||
| − | Your $UCVM_INSTAlL_PATH is now set to "<<YOUR_BUILD_LOCATION>> | + | Your $UCVM_INSTAlL_PATH is now set to "<<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm_install"<br> |
| − | and your $UCVM_SRC_PATH is set to "<<YOUR_BUILD_LOCATION>> | + | and your $UCVM_SRC_PATH is set to "<<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm" |
To check if your ucvm environment is setup properly, | To check if your ucvm environment is setup properly, | ||
Latest revision as of 18:37, 28 March 2023
Contents
Frontera environment
Does not need any additional environment setup
Default Modules :
Currently Loaded Modules:
1) intel/19.1.1 3) git/2.24.1 5) python3/3.7.0 7) pmix/3.1.4 9) xalt/2.10.34 2) impi/19.0.9 4) autotools/1.2 6) cmake/3.24.2 8) hwloc/1.11.12 10) TACC
Script to build UCVM
Copy the script below to your home directory.
Replace <<YOUR_BUILD_LOCATION>> in the script to point to your big scratch location(either scratch1 or scratch2)
#!/bin/bash export MY_TOP=<<YOUR_BUILD_LOCATION>> export TOP_UCVM_TARGET=$MY_TOP/TARGET_UCVM export UCVM_SRC_PATH=$TOP_UCVM_TARGET/ucvm export UCVM_INSTALL_PATH=$TOP_UCVM_TARGET/ucvm_install rm -rf $TOP_UCVM_TARGET mkdir $TOP_UCVM_TARGET cd $TOP_UCVM_TARGET git clone https://github.com/SCECcode/ucvm.git -b withSCPBR # all available velocity models in this UCVM branch # #cvmh,cencal,cca,cs173,cs173h,albacore,cvlsu,ivlsu,wfcvm #cvms,cvms5,cvmsi #cvmhibbn,cvmhlabn,cvmhrbn,cvmhsbbn,cvmhsbcbn,cvmhsgbn,cvmhsmbn,cvmhstbn,cvmhvbn #sjcz # cd $UCVM_SRC_PATH/largefiles # select the models to build/install ./get_largefiles.py -m cvmsi,cvms5,cvmh,cvms,cencal cd $UCVM_SRC_PATH/largefiles; ./check_largefiles_md5.py cd $UCVM_SRC_PATH/largefiles; ./stage_largefiles.py cd $UCVM_SRC_PATH ./ucvm_setup.py -d -a -p $UCVM_INSTALL_PATH &> ucvm_setup_install.log cd $UCVM_SRC_PATH; make check echo "..EXITING.." exit
Run the script to build your UCVM installation,
chmod +x script source ./script
Test your UCVM installation
setup your UCVM enabled environment,
source <<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm_install/conf/ucvm_env.sh
Your $UCVM_INSTAlL_PATH is now set to "<<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm_install"
and your $UCVM_SRC_PATH is set to "<<YOUR_BUILD_LOCATION>>/TARGET_UCVM/ucvm"
To check if your ucvm environment is setup properly,
which ucvm_query
Following command will show what is available in this UCVM installation,
ucvm_query -H
and it should return,
Usage: ucvm_query [-m models<:ifunc>] [-p user_map] [-c coordtype] [-f config] [-z zmin,zmax] [-b] < file.in
Flags:
-h This help message.
-H Detail help message.
-m Comma delimited list of crustal/GTL models to query in order
of preference. GTL models may optionally be suffixed with ':ifunc'
to specify interpolation function.
-c Z coordinate mode: geo-depth (gd, default), geo-elev (ge).
-f Configuration file. Default is ./ucvm.conf.
-p User-defined map to use for elevation and vs30 data.
-v Display model version information only.
-z Optional depth range for gtl/crust interpolation.
-b Optional output in json format
-l Optional input lat,lon,Z(depth/elevation)
-L Optional interpolation floor limit vs,vp,density(meter in depth mode)
Input format is:
lon lat Z
Output format is:
lon lat Z surf vs30 crustal cr_vp cr_vs cr_rho gtl gtl_vp gtl_vs gtl_rho cmb_algo cmb_vp cmb_vs cmb_rho
Notes:
- If running interactively, type Cntl-D to end input coord list.
Version: 22.7.0
Installed Resources:
1d : crustal model
bbp1d : crustal model
cmuetree : crustal model
1dgtl : gtl
elygtl : gtl
cvmh : crustal model
cencal : crustal model
cvms5 : crustal model
cvmsi : crustal model
cvms : crustal model
ely : ifunc
taper : ifunc
ucvm : map
yong : map
model_etree : model i/f
model_patch : model i/f
map_etree : map i/fand it should return,
Using a test file from UCVM regression suite,
-118.0 34.0 0.0 -118.0 34.0 50.0 -118.0 34.0 100.0 -118.0 34.0 500.0 -118.0 34.0 1000.0
Calling ucvm_query to query cvmsi model and interpolate it with the taper algorithm,
ucvm_query -m cvmsi,elygtl:taper -f $UCVM_INSTALL_PATH/conf/ucvm.conf < $UCVM_INSTALL_PATH/tests/inputs/test_latlons.txt
should return,
Using Geo Depth coordinates as default mode. -118.0000 34.0000 0.000 284.191 580.043 cvmsi 3035.433 1719.851 2402.684 elygtl 0.000 580.043 0.000 taper 1700.000 500.000 1974.976 -118.0000 34.0000 50.000 284.191 580.043 cvmsi 3035.433 1719.851 2402.684 elygtl 0.000 580.043 0.000 taper 1700.000 548.000 2128.620 -118.0000 34.0000 100.000 284.191 580.043 cvmsi 3035.433 1719.851 2402.684 elygtl 0.000 580.043 0.000 taper 1700.000 603.470 2130.773 -118.0000 34.0000 500.000 284.191 580.043 cvmsi 3035.433 1719.851 2402.684 elygtl 0.000 580.043 0.000 taper 2701.194 1475.595 2354.105 -118.0000 34.0000 1000.000 284.191 580.043 cvmsi 3330.891 1945.586 2443.042 none 0.000 0.000 0.000 crust 3330.891 1945.586 2443.042
