Difference between revisions of "UCVM Install Stampede3"

Latest revision as of 16:48, 1 August 2025

We installed and tested UCVM_25_7 on Stampede3

1 Modules used on Stampede3
2 Define Install Parameters
3 Large file retrieval
4 Check file results
5 Automated Install of all models
6 Scripted Install Command
7 Check ucvm_setup_output.log
8 Run Tests
9 Determine if MPI executable were built
10 GitHub UCVM Info Page
11 Unit Test and Accept Test
12 MPI Tests
13 ucvm2mesh_mpi numerical considerations
14 Simple ucvm2mesh_mpi tests
15 large mesh generation
16 Full Build Logfile

Modules used on Stampede3

Successful Build with these modules


login4.stampede3(1347)$ module list

Currently Loaded Modules:
  1) autotools/1.4   2) cmake/3.31.5   3) xalt/3.1.1   4) python/3.9.18   5) TACC   6) gcc/13.2.0   7) impi/21.11

This successful build required moving the cs248 .dat files from ucvm_src/work/model/cs248 over to the install directory. After automated install, that directory only included the .gz files, and not the .dat files, so the model access tests were failing. This very large model will be removed from the install prompts because it exceed 350GB in size, unreasonable for most modelers.

Failed Builds with these modules

login4.stampede3(1151)$ module list

Currently Loaded Modules:
  1) intel/24.0   2) impi/21.11   3) autotools/1.4   4) cmake/3.31.5   5) xalt/3.1.1   6) python/3.9.18   7) TACC

module load gcc/15.1.0

login4.stampede3(1200)$ module list

Currently Loaded Modules:
  1) autotools/1.4   2) cmake/3.31.5   3) xalt/3.1.1   4) python/3.9.18   5) TACC   6) gcc/15.1.0   7) impi/21.15

These compilers failed to include a method "powxxx" which is needed by ssh_generate, so one of the acceptance tests was failing with these other compilers with "Starting pow3iso Segmentation fault (core dumped)"

Define Install Parameters

These need to be defined in your .bashrc during installation. After installation, they can be removed from the .bashrc because they will be defined at run-time when the ucvm_env.sh is run

export UCVM_SRC_PATH=$WORK/ucvm_src/ucvm
export UCVM_INSTALL_PATH=$WORK/ucvm_257

Large file retrieval

The UCVM 25.7 ucvm_setup.py asks if you want to install the following list of models. A full install involves all of these. But you may not need all these models, and you can reduce your disk usage by only installing the models you plan to work with.

login4.stampede3(1098)$ ./get_largefiles.py
Getting largefiles for UCVM version: 25.7
Running in ./largefiles source directory. 
This script will download and install ucvm.e, ucvm_utah.e and several other files.
Due to the size of the files, this download could take minutes to hours to complete.

Would you like to download cvms5, will need 1.2G?
Enter yes or no: yes

Would you like to download cca, will need 1.1G?
Enter yes or no: yes

Would you like to download cvms, will need 326M?
Enter yes or no: yes

Would you like to download cvmsi, will need 1.6G?
Enter yes or no: yes

Would you like to download cvmh, will need 1.6G?
Enter yes or no: yes

Would you like to download albacore, will need 2.3M?
Enter yes or no: yes

Would you like to download cvlsu, will need 7.0M?
Enter yes or no: yes

Would you like to download ivlsu, will need 3.1M?
Enter yes or no: yes

Would you like to download wfcvm, will need 50M?
Enter yes or no: yes

Would you like to download cvmhlabn, will need 1.6G?
Enter yes or no: yes

Would you like to download cvmhsgbn, will need 1.4G?
Enter yes or no: yes

Would you like to download cvmhvbn, will need 1.5G?
Enter yes or no: yes

Would you like to download cvmhibbn, will need 2.1G?
Enter yes or no: yes

Would you like to download cvmhrbn, will need 1.4G?
Enter yes or no: yes

Would you like to download cvmhstbn, will need 2.5G?
Enter yes or no: yes

Would you like to download cvmhsbbn, will need 1.3G?
Enter yes or no: yes

Would you like to download cvmhsbcbn, will need 1.6G?
Enter yes or no: yes

Would you like to download cvmhsmbn, will need 1.6G?
Enter yes or no: yes

Would you like to download sfcvm, will need 2.9G?
Enter yes or no: yes

Would you like to download uwlinca, will need 700K?
Enter yes or no: yes

Would you like to download sjfz, will need 12M?
Enter yes or no: yes

Would you like to download canvas, will need 39M?
Enter yes or no: yes

Would you like to download uwsfbcvm, will need 864K?
Enter yes or no: yes
Installing files in: /scratch/00329/tg456034/ucvm_src/ucvm/largefiles
Retrieving:  sfcvm/dependencies

Check file results

the checkfile.py script completes like this:

File: proj-data-1.11.tar.gz OK
Checking file: test-grid-lib-1d.ref
File: test-grid-lib-1d.ref OK
Checked 36 UCVM large files with: 36 OK, and: 0 errors

Automated Install of all models

You can do an interactive build, responding to prompts on the command line. But to capture the build log, it may help to do an scripted build of all models using the commands below. This will write the make results to an output file.

I recommend you do this on a interactive node, not the head node. I recommend two hours of node time to do this build, just to be safe that your build isn't killed by the scheduler.

Example On Stampede3

idev -p skx -N 2 -n 8 -m 150 # skx queue, 2 nodes, 8 total tasks, 150 minutes

This spec should give me the full node and make all 96GB memory available to my job.

% idev -p skx -N 1 -n 1 -m 120


# Unbuffer python log files so results are visible during build
export PYTHONUNBUFFERED=TRUE

#
#
# Automatically sets up UCVMC and alerts the user to potential complications.
#

./ucvm_setup.py -a -d -p your-ucvm-install-path >& ucvm_setup_install.log  &

#	-s  --static       Use static linking.
#	-d  --dynamic      Use dynamic linking.
#	-a  --all          Use all available models.
#	-r  --restart      This is a restart of ucvm_setup.py call.
#	-p  --path         use supplied installation path.
#	-h  --help         usage.
#UCVMC 25.7.0

Scripted Install Command

Check module list
Check UCVM ENV params
Check PYTHON BUFFER environment (export PYTHONUNBUFFERED=TRUE)
- Then

 ./ucvm_setup.py -a -d -p /scratch/00329/tg456034/ucvm_257 >& ucvm_setup_install.log &

Check ucvm_setup_output.log

Confirm no errors in the output log... A full output log file is posted at the end of this entry

tail ucvm_setup_install.log


This will run the UCVM unit and acceptance tests. If all tests pass, 
UCVM is correctly installed and ready to use on your computer.
To try out ucvm, once the tests pass, run an example query.

   $ ucvm_query -f /scratch/00329/tg456034/ucvm_257/conf/ucvm.conf -m cvms < /scratch/00329/tg456034/ucvm_257/tests/inputs/test_latlons.txt

You will then see the following output:

Using Geo Depth coordinates as default mode.
 -118.0000    34.0000      0.000    280.896    390.000       cvms    696.491    213.000   1974.976       none      0.000      0.000      0.000      crust    696.491    213.000   1974.976
 -118.0000    34.0000     50.000    280.896    390.000       cvms   1669.540    548.000   2128.620       none      0.000      0.000      0.000      crust   1669.540    548.000   2128.620
 -118.0000    34.0000    100.000    280.896    390.000       cvms   1683.174    603.470   2130.773       none      0.000      0.000      0.000      crust   1683.174    603.470   2130.773
-118.0000    34.0000    500.000    280.896    390.000       cvms   3097.562   1656.495   2354.105       none      0.000      0.000      0.000      crust   3097.562   1656.495   2354.105
 -118.0000    34.0000   1000.000    280.896    390.000       cvms   3660.809   2056.628   2443.042       none      0.000      0.000      0.000      crust   3660.809   2056.628   2443.042

Installation complete. Installation log file saved at ./setup_log.sh

Confirm all expected CVMs are installed

login4.stampede3(1123)$ ucvm_query -H
Usage: ucvm_query [-m models<:ifunc>] [-p user_map] [-c coordtype] [-f config] [-z zmin,zmax] [-b] < file.in

Flags:
	-h This help message.
	-H Detail help message.
	-m Comma delimited list of crustal/GTL models to query in order
	   of preference. GTL models may optionally be suffixed with ':ifunc'
	   to specify interpolation function.
	   example:  -m cvms5,elygtl:taper
	-c Z coordinate mode: geo-depth (gd, default), geo-elev (ge).
	-f Configuration file. Default is ./ucvm.conf.
	-p User-defined map to use for elevation and vs30 data.
	-v Display model version information only.
	-z Optional depth range for gtl/crust interpolation(in meter).
	   example:  -z 0,450
	-b Optional output in json format
	-l Optional input lat,lon,Z(depth/elevation, in meter)
	   example:  -l 34.455,-121.941,100, or -l 34.455,-121.941,-100
	-L Optional interpolation floor limit vs,vp,density(meter in depth mode)
	   example:  -L 500,1700,1700
	-P Optional model configuration(model_param:key,value)
	   example:  -P sfcvm_param:SquashMinElev,-5000.0
Input format is:
	lon lat Z

Output format is:
	lon lat Z surf vs30 crustal cr_vp cr_vs cr_rho gtl gtl_vp gtl_vs gtl_rho cmb_algo cmb_vp cmb_vs cmb_rho

Notes:
	- If running interactively, type Cntl-D to end input coord list.

Version: 25.7.0

Installed Resources:
          1d : crustal model
       bbp1d : crustal model
        nc1d : crustal model
        sf1d : crustal model
    cmuetree : crustal model
       1dgtl : gtl
      elygtl : gtl
       ivlsu : crustal model
       cvlsu : crustal model
    albacore : crustal model
       cvms5 : crustal model
       cvmsi : crustal model
        cvms : crustal model
    cvmhlabn : crustal model
    cvmhsgbn : crustal model
     cvmhvbn : crustal model
       sfcvm : crustal model
     uwlinca : crustal model
      canvas : crustal model
    uwsfbcvm : crustal model
        cvmh : crustal model
    cvmhsmbn : crustal model
   cvmhsbcbn : crustal model
    cvmhsbbn : crustal model
    cvmhstbn : crustal model
     cvmhrbn : crustal model
    cvmhibbn : crustal model
       wfcvm : crustal model
         cca : crustal model
        sjfz : crustal model
         ely : ifunc
       taper : ifunc
        ucvm : map
   ucvm_utah : map
        yong : map
 model_etree : model i/f
 model_patch : model i/f
   map_etree : map i/f

Run Tests

$ make check -- in build directory

or

$ ./run-testing - in install directory/tests

Determine if MPI executable were built

After the ucvm_env.sh is run, you can dtermine if mpi executable were built by running an mpi command:

basin_query_mpi

If this has been build, the other mpi executable should also be built!

GitHub UCVM Info Page

Update the link on github page from this to a replacement: https://www.scec.org/research/ucvm

Unit Test and Accept Test

% make check

MPI Tests

Simple basin_query_mpi Tests

The first two tests required the basin_query_mpi executable, and the cvms5 model. The tests extract some basin depth values from a model. It then compares the extracted data from expected data that is included in input file The command used is:

login1.stampede3(1761)$ basin_query_mpi -h
Usage: basin_query_mpi [-h] [-b outfile] [-m models<:ifunc>] [-f config] [-d max_depth] [-i inter] [-v vs_thresh] [-l lon,lat] [-s spacing] [-x num lon pts] [-y num lat pts]

where:
	-b Binary output to file.
	-h This help message
	-f Configuration file. Default is ./ucvm.conf.
	-i Interval between query points along z-axis (m, default is 20.0)
	-m Comma delimited list of crustal/GTL models to query in order
	-v Vs threshold (m/s, default is 1000.0).
	-l Bottom-left lat,lon separated by comma.
	-s Grid spacing.
	-x Number of longitude points.
	-y Number of latitude points.
Notes:
	- If running interactively, type Cntl-D to end input coord list.

Version: 25.7.

ibrun ${UCVM_INSTALL_PATH}/bin/basin_query_mpi -b ./${TEST}.simple \
  -f ${UCVM_INSTALL_PATH}/conf/ucvm.conf -m cvms5 -i 20 -v 2500 -l 35.0,-122.5 -s 0.1 -x 16 -y 11

These parameters mean:
-b output binary file
-m use model cvms5
-i interval between query points 20m
-v find depth to Vs2500
-l bottom left of region to search
-s grid spacing in degree
-x number of lat points
-y number of lon points

twotasks_onenode.slurm - Test on 1 node with two tasks on one node
twotasks_twonodes.slurm - Test on 2 nodes with one task per node for a total of two tasks

ucvm2mesh_mpi numerical considerations

To figure our how to divide your ucvm2mesh_mpi job onto multiple processors, first calculate the total mesh points. We will use the following example, which defines a 1760800 mesh point mesh.

Number of cells along each dim

nx=384 ny=248 nz=25

To divide the ucvm queries among several processors, we need to specify the length, width, and depth of our simulation volume. The length of the volume is defined as nx * spacing, the width is ny * spacing, and the depth is nz * spacing.

For the MPI version of ucvm2mesh-mpi, we need to specify the number of processors to dedicate to each axis. The total number of processors required is px * py * pz. For this example, we would need 20 cores dedicated to this task. Using our example above, we can divide the nx mesh points by 2, the number of ny mesh points by 2, and the number of nz mesh points by 5. So the number of processors in each direction can be used:

Then we divide the mesh points onto a number of processors, in each direction. An important constraint is that the number of mesh points must evenly by the number of processors. The guideline for the processors are that px * py * pz = num processors in the job. So for each x, y, and z, nx / px, ny / py, nz / pz, must be whole numbers. So if nx is 1000, px cannot be 3 but px can be 5. If you have a prime number of mesh points in a direction, you must use 1, or the prime number of processors.

Partitioning of grid among processors

px=2 py=2 pz=5

For ucvm2mesh-mpi, we need to specify the number of processors to dedicate to each axis. The total number of processors required is px * py * pz. For this example, we would need 20 cores dedicated to this task. Seismological parameters

Simple ucvm2mesh_mpi tests

These tests call the ucvm2mesh_mpi and ucvm2mesh_mpi_layer to generate a small mesh file. It's not clear if the stampede3 system will do variable substitution, so we put absoluate path names into this file instead of environment variables defined on stamped3 including $WORK and $SCRATCH the 20x20x50 mesh points are 20,000 pts total. The model used is cvmsi. The input configuration file is:

# List of CVMs to query
ucvmlist=cvmsi

# UCVM conf file
ucvmconf=/work2/00329/tg456034/stampede3/ucvm_257/conf/ucvm.conf

# Gridding cell centered or vertex
gridtype=CENTER

# Spacing of cells
spacing=20.0

# Projection
proj=+proj=utm +datum=WGS84 +zone=11
rot=-39.9
x0=-118.20819
y0=33.85173
z0=0.0

# Number of cells along each dim
nx=20
ny=20
nz=50

# Partitioning of grid among cores
px=2
py=2
pz=10

# Vs/Vp minimum
vp_min=0
vs_min=0


# Mesh and grid files, format
meshfile=la_habra_cvmsi.media
gridfile=la_habra_cvmsi.grid
meshtype=IJK-12

# Location of scratch dir
scratch=/scratch/00329/tg456034

ucvm2mesh_mpi

This slurm script is called: ucvm_mpi.slurm It appears that the ibrun pre-processing has problems parsing the *.conf file without spaces between the +datum value. We currently resolve this issue by copying the executable to the local directory, then running the script. The slurm script looks like this:

Based on the Stamped3 documentation, they recommend defining -N (number of nodes) and -n (total number of cores (aka tasks), the letting the ibrun figure out how to distribut them. As a result, we remove additional command line params from the ibrun command.

In this case, we are saying run on one node, and use twenty cores.

There is a restriction that the number of cores (as calculated from the .conf file 2 * 2 * 10 = 40) must be evently divisible by the number of cores requested (which is 20).

ucvm_mpi.slurm
::::::::::::::
#!/bin/bash

#SBATCH -t 00:30:00
#SBATCH -N 1
#SBATCH -n 20
#SBATCH --partition=skx
#SBATCH --account=DS-Cybershake
#SBATCH --output=ucvm_mpi-%x.%j.out
#SBATCH --error=ucvm_mpi-%x.%j.err
#SBATCH --mail-user=maechlin@usc.edu
#SBATCH --mail-type=ALL
#SBATCH --export=ALL

####################
## Configuration ##
####################

source /work2/00329/tg456034/stampede3/ucvm_257/conf/ucvm_env.sh
cp ${UCVM_INSTALL_PATH}/bin/ucvm2mesh_mpi .

ibrun ./ucvm2mesh_mpi -f ./la_habra_cvmsi.conf

the manual page for the ucvm2mesh_mpi comamand is:

login1.stampede3(1777)$ ucvm2mesh_mpi -h
[0] ucvm2mesh_mpi Version: 25.7.0
[0] Running on 1 cores
Usage: ucvm2mesh_mpi [-h] [-o dir] -f configfile

where:
	-h: help message
	-o: final stage out directory for mesh files
	-f: config file containing mesh params

Config file format:
	ucvmlist: comma-delimited list of CVMs to query (as supported by UCVM)
	ucvmconf: UCVM API config file
	gridtype: location of x-y gridded points: VERTEX, or CENTER
	querymode: query mode, DEPTH, or ELEVATION
	spacing: grid spacing (units appropriate for proj)
	proj: Proj.4 projection specification, or 'cmu' for TeraShake
	rot: proj rotation angle in degrees, (+ is counter-clockwise)
	x0: longitude of origin (deg), or x offset in cmu proj (m)
	y0: latitude of origin (deg), or y offset in cmu proj (m)
	z0: depth of origin (m, typically 0.0)
	nx: number of points along x-axis
	ny: number of points along y-axis
	nz: number of points along z-axis (depth positive)
	px: number of procs along x-axis
	py: number of procs along y-axis
	pz: number of procs along z-axis
	vp_min: vp minimum (m/s), enforced on vs_min conditions
	vs_min: vs minimum (m/s)
	meshfile: path and basename to output mesh files
	gridfile: path and filename to output grid filesfiles
	meshtype: mesh format: IJK-12, IJK-20, IJK-32, or SORD
	scratch: path to scratch space

Version: 25.7.0

The second test is also a small mesh, but it is extracted in layers. This calls three

#!/bin/bash

#SBATCH -t 00:30:00
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=12
#SBATCH --partition=skx
#SBATCH --account=DS-Cybershake
#SBATCH --output=skx_etas-%x.%j.out
#SBATCH --error=skx_etas-%x.%j.err
#SBATCH --mail-user=maechlin@usc.edu
#SBATCH --mail-type=ALL
#SBATCH --export=ALL

####################
## Configuration ##
####################

source /work2/00329/tg456034/stampede3/ucvm_257/conf/ucvm_env.sh
cp ${UCVM_INSTALL_PATH}/bin/ucvm2mesh_mpi_layer .

ibrun -n 4 ./ucvm2mesh_mpi_layer -f la_habra_cvmsi.conf -l 1 -c 3 &
ibrun -n 4 ./ucvm2mesh_mpi_layer -f la_habra_cvmsi.conf -l 4 -c 3 &
ibrun -n 4 ./ucvm2mesh_mpi_layer -f la_habra_cvmsi.conf -l 7 -c 4 &

wait
echo "Simulation complete. Exit code: $RET"
date

the man pages for this command are:

login1.stampede3(1780)$ ucvm2mesh_mpi_layer -h
[0] ucvm2mesh_mpi_layer Version: 25.7.0
[0] Running on 1 cores
Usage: ucvm2mesh_mpi_layer [-h] [-o dir] -f configfile [-l layer] [-c count]

where:
	-h: help message
	-f: config file containing mesh params

	-l: which rank layer to start process

	-c: how many rank layer to process

Config file format:
	ucvmlist: comma-delimited list of CVMs to query (as supported by UCVM)
	ucvmconf: UCVM API config file
	gridtype: location of x-y gridded points: VERTEX, or CENTER
	querymode: query mode, DEPTH, or ELEVATION
	spacing: grid spacing (units appropriate for proj)
	proj: Proj.4 projection specification, or 'cmu' for TeraShake
	rot: proj rotation angle in degrees, (+ is counter-clockwise)
	x0: longitude of origin (deg), or x offset in cmu proj (m)
	y0: latitude of origin (deg), or y offset in cmu proj (m)
	z0: depth of origin (m, typically 0.0)
	nx: number of points along x-axis
	ny: number of points along y-axis
	nz: number of points along z-axis (depth positive)
	px: number of procs along x-axis
	py: number of procs along y-axis
	pz: number of procs along z-axis
	vp_min: vp minimum (m/s), enforced on vs_min conditions
	vs_min: vs minimum (m/s)
	meshfile: path and basename to output mesh files
	gridfile: path and filename to output grid filesfiles
	meshtype: mesh format: IJK-12, IJK-20, IJK-32, or SORD
	scratch: path to scratch space

Version: 25.7.0

large mesh generation

This creates three meshes using ucvm2mesh_mpi. The first two are small examples to show the configuration is usable and executable okay. The third is a large mesh, 20m used for La Habra simulation with over 1B points. This is a fairly large stress test for the software and the system.

The first two scripts called:
- tiny.slurm

#SBATCH -t 00:30:00
#SBATCH -N 1
#SBATCH -n 20
#SBATCH --partition=skx
#SBATCH --account=DS-Cybershake
#SBATCH --output=tiny_ucvm-%x.%j.out
#SBATCH --error=tiny_ucvm-%x.%j.err
#SBATCH --mail-user=maechlin@usc.edu
#SBATCH --mail-type=ALL
#SBATCH --export=ALL

source /work2/00329/tg456034/stampede3/ucvm_257/conf/ucvm_env.sh
cp ${UCVM_INSTALL_PATH}/bin/ucvm2mesh_mpi .
ibrun ./ucvm2mesh_mpi -f ./lahabra_200m.conf
date +"%s"
echo "Simulation complete. Exit code: $RET"

We then use a lahabra_200m.conf configuration file. This limits the number of requested processor so that we can test the configuraiton and slurm files, before running full scale. This sizes the job at 40 cores, so the requested core of 20 evenly divides this count

login1.stampede3(1788)$ more lahabra_200m.conf
# List of CVMs to query
ucvmlist=cvmsi

# UCVM conf file
ucvmconf=/work2/00329/tg456034/stampede3/ucvm_257/conf/ucvm.conf

# Gridding cell centered or vertex
gridtype=CENTER

# Spacing of cells
spacing=20.0

# Projection
proj=+proj=utm +datum=WGS84 +zone=11
rot=-39.9
x0=-118.20819
y0=33.85173
z0=0.0

# Number of cells along each dim
nx=20
ny=20
nz=50

# Partitioning of grid among cores
px=2
py=2
pz=10

# Vs/Vp minimum
vp_min=0
vs_min=0


# Mesh and grid files, format
meshfile=la_habra_cvmsi.media
gridfile=la_habra_cvmsi.grid
meshtype=IJK-12

# Location of scratch dir
scratch=/scratch/00329/tg45603

We then test the full scale configuration file with test small.slurm. The cores in the .conf are 25 x 25 x10 or 6250. We confirm that this is evenly divisible by the requested number of

#!/bin/bash

#SBATCH -t 00:30:00
#SBATCH -N 25
#SBATCH -n 6250 
#SBATCH --partition=skx
#SBATCH --account=DS-Cybershake
#SBATCH --output=small_ucvm-%x.%j.out
#SBATCH --error=small_ucvm-%x.%j.err
#SBATCH --mail-user=maechlin@usc.edu
#SBATCH --mail-type=ALL
#SBATCH --export=ALL

####################
## Configuration ##
####################

source /work2/00329/tg456034/stampede3/ucvm_257/conf/ucvm_env.sh
cp ${UCVM_INSTALL_PATH}/bin/ucvm2mesh_mpi .
echo "start"
date +"%s"
ibrun ./ucvm2mesh_mpi -f ./lahabra_20m.conf
date +"%s"
echo "Simulation complete. Exit code: $RET"

The input config file looks like this:

login1.stampede3(1793)$ more lahabra_20m.conf
# List of CVMs to query
ucvmlist=cvmsi

# UCVM conf file
ucvmconf=/work2/00329/tg456034/stampede3/ucvm_257/conf/ucvm.conf

# Gridding cell centered or vertex (CENTER, VERTEX)
gridtype=CENTER

# Spacing of cells
spacing=20.0

# Projection
proj=+proj=utm +datum=WGS84 +zone=11
rot=-39.9
x0=-118.20819
y0=33.85173
z0=0.0

# Number of cells along each dim
nx=1400
ny=1400
nz=600

# Partitioning of grid among processors (request px*py*pz processes in mpi submit)
px=25
py=25
pz=10

# Vs/Vp minimum
vp_min=0
vs_min=0

# Mesh and grid files. Meshtype must be one of valid formats (IJK-12, IJK-20, IJK-32, SORD)
meshfile=/scratch/00329/tg456034/mesh_cvmsi_lahabra_20m_mpi.media
gridfile=/scratch/00329/tg456034/mesh_cvmsi_lahabra_20m_mpi.grid
meshtype=IJK-32

# Location of scratch dir
scratch=/scratch/00329/tg456034

Full Build Logfile

This is an example of the output from the ./ucvm_setup.py on a successful build (on Stampede3)

login4.stampede3(1115)$ cat *.log
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by UCVM configure 25.7.0, which was
generated by GNU Autoconf 2.72.  Invocation command line was

  $ ./configure --enable-silent-rules --with-fftw-include-path=/scratch/00329/tg456034/ucvm_257/lib/fftw/include --with-fftw-lib-path=/scratch/00329/tg456034/ucvm_257/lib/fftw/lib --with-etree-include-path=/scratch/00329/tg456034/ucvm_257/lib/euclid3/include --with-etree-lib-path=/scratch/00329/tg456034/ucvm_257/lib/euclid3/lib --with-hdf5-include-path=/scratch/00329/tg456034/ucvm_257/lib/hdf5/include --with-hdf5-lib-path=/scratch/00329/tg456034/ucvm_257/lib/hdf5/lib --with-openssl-include-path=/scratch/00329/tg456034/ucvm_257/lib/openssl/include --with-openssl-lib-path=/scratch/00329/tg456034/ucvm_257/lib/openssl/lib --with-tiff-include-path=/scratch/00329/tg456034/ucvm_257/lib/tiff/include --with-tiff-lib-path=/scratch/00329/tg456034/ucvm_257/lib/tiff/lib --with-sqlite-include-path=/scratch/00329/tg456034/ucvm_257/lib/sqlite/include --with-sqlite-lib-path=/scratch/00329/tg456034/ucvm_257/lib/sqlite/lib --with-curl-include-path=/scratch/00329/tg456034/ucvm_257/lib/curl/include/curl --with-curl-lib-path=/scratch/00329/tg456034/ucvm_257/lib/curl/lib --with-proj-include-path=/scratch/00329/tg456034/ucvm_257/lib/proj/include --with-proj-lib-path=/scratch/00329/tg456034/ucvm_257/lib/proj/lib --enable-model-cvms5 --with-cvms5-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvms5/lib --with-cvms5-include-path=/scratch/00329/tg456034/ucvm_257/model/cvms5/include --enable-model-cca --with-cca-lib-path=/scratch/00329/tg456034/ucvm_257/model/cca/lib --with-cca-include-path=/scratch/00329/tg456034/ucvm_257/model/cca/include --enable-model-cvms --with-cvms-include-path=/scratch/00329/tg456034/ucvm_257/model/cvms/include --with-cvms-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvms/lib --with-cvms-model-path=/scratch/00329/tg456034/ucvm_257/model/cvms/data/cvms --enable-model-cvmsi --with-cvmsi-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmsi/lib --with-cvmsi-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmsi/include --with-cvmsi-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmsi/data/i26 --enable-model-cvmh --with-gctpc-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmh/lib --with-cvmh-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmh/lib --with-cvmh-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmh/include --with-cvmh-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmh/model --enable-model-albacore --with-albacore-lib-path=/scratch/00329/tg456034/ucvm_257/model/albacore/lib --with-albacore-include-path=/scratch/00329/tg456034/ucvm_257/model/albacore/include --enable-model-cvlsu --with-cvlsu-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvlsu/lib --with-cvlsu-include-path=/scratch/00329/tg456034/ucvm_257/model/cvlsu/include --enable-model-ivlsu --with-ivlsu-lib-path=/scratch/00329/tg456034/ucvm_257/model/ivlsu/lib --with-ivlsu-include-path=/scratch/00329/tg456034/ucvm_257/model/ivlsu/include --enable-model-wfcvm --with-wfcvm-lib-path=/scratch/00329/tg456034/ucvm_257/model/wfcvm/lib --with-wfcvm-include-path=/scratch/00329/tg456034/ucvm_257/model/wfcvm/include --with-wfcvm-model-path=/scratch/00329/tg456034/ucvm_257/model/wfcvm/src --enable-model-cvmhlabn --with-cvmhlabn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhlabn/lib --with-cvmhlabn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhlabn/include --with-cvmhlabn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhlabn/data/cvmhlabn --enable-model-cvmhsgbn --with-cvmhsgbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsgbn/lib --with-cvmhsgbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsgbn/include --with-cvmhsgbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsgbn/data/cvmhsgbn --enable-model-cvmhvbn --with-cvmhvbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhvbn/lib --with-cvmhvbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhvbn/include --with-cvmhvbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhvbn/data/cvmhvbn --enable-model-cvmhibbn --with-cvmhibbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhibbn/lib --with-cvmhibbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhibbn/include --with-cvmhibbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhibbn/data/cvmhibbn --enable-model-cvmhrbn --with-cvmhrbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhrbn/lib --with-cvmhrbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhrbn/include --with-cvmhrbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhrbn/data/cvmhrbn --enable-model-cvmhstbn --with-cvmhstbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhstbn/lib --with-cvmhstbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhstbn/include --with-cvmhstbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhstbn/data/cvmhstbn --enable-model-cvmhsbbn --with-cvmhsbbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbbn/lib --with-cvmhsbbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbbn/include --with-cvmhsbbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbbn/data/cvmhsbbn --enable-model-cvmhsbcbn --with-cvmhsbcbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbcbn/lib --with-cvmhsbcbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbcbn/include --with-cvmhsbcbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbcbn/data/cvmhsbcbn --enable-model-cvmhsmbn --with-cvmhsmbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsmbn/lib --with-cvmhsmbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsmbn/include --with-cvmhsmbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsmbn/data/cvmhsmbn --enable-model-sfcvm --with-sfcvm-lib-path=/scratch/00329/tg456034/ucvm_257/model/sfcvm/lib --with-sfcvm-include-path=/scratch/00329/tg456034/ucvm_257/model/sfcvm/include --with-sfcvm-model-path=/scratch/00329/tg456034/ucvm_257/model/sfcvm/data/sfcvm --enable-model-uwlinca --with-uwlinca-lib-path=/scratch/00329/tg456034/ucvm_257/model/uwlinca/lib --with-uwlinca-include-path=/scratch/00329/tg456034/ucvm_257/model/uwlinca/include --enable-model-sjfz --with-sjfz-lib-path=/scratch/00329/tg456034/ucvm_257/model/sjfz/lib --with-sjfz-include-path=/scratch/00329/tg456034/ucvm_257/model/sjfz/include --enable-model-canvas --with-canvas-lib-path=/scratch/00329/tg456034/ucvm_257/model/canvas/lib --with-canvas-include-path=/scratch/00329/tg456034/ucvm_257/model/canvas/include --enable-model-uwsfbcvm --with-uwsfbcvm-lib-path=/scratch/00329/tg456034/ucvm_257/model/uwsfbcvm/lib --with-uwsfbcvm-include-path=/scratch/00329/tg456034/ucvm_257/model/uwsfbcvm/include --prefix=/scratch/00329/tg456034/ucvm_257

## --------- ##
## Platform. ##
## --------- ##

hostname = login4.stampede3.tacc.utexas.edu
uname -m = x86_64
uname -r = 5.14.0-503.23.2.el9_5.x86_64
uname -s = Linux
uname -v = #1 SMP PREEMPT_DYNAMIC Thu Feb 13 09:52:14 UTC 2025

/usr/bin/uname -p = x86_64
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /work2/00329/tg456034/stampede3/ucerf3/ucerf3-etas-launcher/parallel/slurm_sbin/
PATH: /work2/00329/tg456034/stampede3/ucerf3/ucerf3-etas-launcher/sbin/
PATH: /work2/00329/tg456034/stampede3/mpj-express/bin/
PATH: /work2/00329/tg456034/stampede3/jdk-22.0.2/bin/
PATH: ./
PATH: /opt/apps/xalt/xalt/bin/
PATH: /opt/intel/oneapi/mpi/2021.11/opt/mpi/libfabric/bin/
PATH: /opt/intel/oneapi/mpi/2021.11/libfabric/bin/
PATH: /opt/intel/oneapi/mpi/2021.11/bin/
PATH: /opt/apps/gcc/13.2.0/bin/
PATH: /scratch/projects/compilers/intel24.0/oneapi/intelpython/python3.9/bin/
PATH: /home1/apps/cmake/3.31.5/bin/
PATH: /opt/apps/autotools/1.4/bin/
PATH: /usr/local/bin/
PATH: /usr/bin/
PATH: /usr/local/sbin/
PATH: /usr/sbin/
PATH: ./
PATH: /work2/00329/tg456034/stampede3/ucerf3/ucerf3-etas-launcher/parallel/slurm_sbin/
PATH: /work2/00329/tg456034/stampede3/ucerf3/ucerf3-etas-launcher/sbin/
PATH: /work2/00329/tg456034/stampede3/mpj-express/bin/


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2691: looking for aux files: compile config.guess config.sub missing install-sh
configure:2704:  trying ././aux-config/
configure:2733:   ././aux-config/compile found
configure:2733:   ././aux-config/config.guess found
configure:2733:   ././aux-config/config.sub found
configure:2733:   ././aux-config/missing found
configure:2715:   ././aux-config/install-sh found
configure:2865: checking for a BSD-compatible install
configure:2939: result: /usr/bin/install -c
configure:2950: checking whether build environment is sane
configure:3005: result: yes
configure:3166: checking for a race-free mkdir -p
configure:3209: result: /usr/bin/mkdir -p
configure:3216: checking for gawk
configure:3237: found /usr/bin/gawk
configure:3249: result: gawk
configure:3260: checking whether make sets $(MAKE)
configure:3284: result: yes
configure:3314: checking whether make supports nested variables
configure:3333: result: yes
configure:3518: checking for ranlib
configure:3539: found /opt/apps/gcc/13.2.0/bin/ranlib
configure:3551: result: ranlib
configure:3581: checking build system type
configure:3597: result: x86_64-pc-linux-gnu
configure:3617: checking host system type
configure:3632: result: x86_64-pc-linux-gnu
configure:3712: checking whether make supports the include directive
configure:3727: make -f confmf.GNU && cat confinc.out
this is the am__doit target
configure:3730: $? = 0
configure:3749: result: yes (GNU style)
configure:3775: checking whether to compile using MPI
configure:3782: result: yes
configure:3844: checking for mpicc
configure:3865: found /opt/intel/oneapi/mpi/2021.11/bin/mpicc
configure:3877: result: mpicc
configure:3957: checking for gcc
configure:3990: result: mpicc
configure:4349: checking for C compiler version
configure:4358: mpicc --version >&5
gcc (GCC) 13.2.0
Copyright (C) 2023 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4369: $? = 0
configure:4358: mpicc -v >&5
mpigcc for the Intel(R) MPI Library 2021.11 for Linux*
Copyright Intel Corporation.
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/opt/apps/gcc/13.2.0/libexec/gcc/x86_64-pc-linux-gnu/13.2.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /admin/build/admin/rpms/stampede3/BUILD/gcc-13.2.0/configure --enable-libssp --enable-gold=yes --enable-ld=default --enable-plugins --enable-lto --with-tune=generic --enable-languages=c,c++,fortran --disable-multilib --prefix=/opt/apps/gcc/13.2.0 --with-gmp=/opt/apps/gcc/13.2.0 --with-mlgmp=/opt/apps/gcc/13.2.0 --with-mpfr=/opt/apps/gcc/13.2.0 --with-mpc=/opt/apps/gcc/13.2.0 --with-isl=/opt/apps/gcc/13.2.0
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 13.2.0 (GCC) 
configure:4369: $? = 0
configure:4358: mpicc -V >&5
gcc: error: unrecognized command-line option '-V'
configure:4369: $? = 1
configure:4358: mpicc -qversion >&5
gcc: error: unrecognized command-line option '-qversion'; did you mean '--version'?
configure:4369: $? = 1
configure:4358: mpicc -version >&5
gcc: error: unrecognized command-line option '-version'
configure:4369: $? = 1
configure:4389: checking whether the C compiler works
configure:4411: mpicc    conftest.c  >&5
configure:4415: $? = 0
configure:4466: result: yes
configure:4470: checking for C compiler default output file name
configure:4472: result: a.out
configure:4478: checking for suffix of executables
configure:4485: mpicc -o conftest    conftest.c  >&5
configure:4489: $? = 0
configure:4513: result: 
configure:4537: checking whether we are cross compiling
configure:4545: mpicc -o conftest    conftest.c  >&5
configure:4549: $? = 0
configure:4556: ./conftest
configure:4560: $? = 0
configure:4575: result: no
configure:4581: checking for suffix of object files
configure:4604: mpicc -c   conftest.c >&5
configure:4608: $? = 0
configure:4632: result: o
configure:4636: checking whether the compiler supports GNU C
configure:4656: mpicc -c   conftest.c >&5
configure:4656: $? = 0
configure:4668: result: yes
configure:4679: checking whether mpicc accepts -g
configure:4700: mpicc -c -g  conftest.c >&5
configure:4700: $? = 0
configure:4747: result: yes
configure:4767: checking for mpicc option to enable C11 features
configure:4782: mpicc  -c -g -O2  conftest.c >&5
configure:4782: $? = 0
configure:4801: result: none needed
configure:4925: checking whether mpicc understands -c and -o together
configure:4948: mpicc -c conftest.c -o conftest2.o
configure:4951: $? = 0
configure:4948: mpicc -c conftest.c -o conftest2.o
configure:4951: $? = 0
configure:4964: result: yes
configure:4983: checking dependency style of mpicc
configure:5096: result: gcc3
configure:5139: checking for function MPI_Init
configure:5167: mpicc -o conftest -g -O2   conftest.c  >&5
configure:5167: $? = 0
configure:5176: result: yes
configure:5188: checking for mpi.h
configure:5201: mpicc -c -g -O2  conftest.c >&5
configure:5201: $? = 0
configure:5203: result: yes
configure:5244: checking if running on the USC Discovery cluster
configure:5255: result: no
configure:6986: checking for stdio.h
configure:6986: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:6986: $? = 0
configure:6986: result: yes
configure:6986: checking for stdlib.h
configure:6986: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:6986: $? = 0
configure:6986: result: yes
configure:6986: checking for string.h
configure:6986: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:6986: $? = 0
configure:6986: result: yes
configure:6986: checking for inttypes.h
configure:6986: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:6986: $? = 0
configure:6986: result: yes
configure:6986: checking for stdint.h
configure:6986: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:6986: $? = 0
configure:6986: result: yes
configure:6986: checking for strings.h
configure:6986: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:6986: $? = 0
configure:6986: result: yes
configure:6986: checking for sys/stat.h
configure:6986: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:6986: $? = 0
configure:6986: result: yes
configure:6986: checking for sys/types.h
configure:6986: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:6986: $? = 0
configure:6986: result: yes
configure:6986: checking for unistd.h
configure:6986: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:6986: $? = 0
configure:6986: result: yes
configure:7011: checking for etree_open in -letree
configure:7040: mpicc -o conftest -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2   -L/scratch/00329/tg456034/ucvm_257/lib/euclid3/lib -letree conftest.c -letree   >&5
configure:7040: $? = 0
configure:7052: result: yes
configure:7056: checking for etree.h
configure:7056: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:7056: $? = 0
configure:7056: result: yes
configure:7075: checking for fftw_execute in -lfftw3
configure:7104: mpicc -o conftest -I/scratch/00329/tg456034/ucvm_257/lib/fftw/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2   -L/scratch/00329/tg456034/ucvm_257/lib/fftw/lib -lfftw3 conftest.c -lfftw3   >&5
configure:7104: $? = 0
configure:7116: result: yes
configure:7120: checking for fftw3.h
configure:7120: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/fftw/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:7120: $? = 0
configure:7120: result: yes
configure:7139: checking for proj_create_crs_to_crs in -lproj
configure:7168: mpicc -o conftest -I/scratch/00329/tg456034/ucvm_257/lib/curl/include/curl -I/scratch/00329/tg456034/ucvm_257/lib/openssl/include -I/scratch/00329/tg456034/ucvm_257/lib/proj/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  -L/scratch/00329/tg456034/ucvm_257/lib/curl/lib -lcurl -L/scratch/00329/tg456034/ucvm_257/lib/openssl/lib -lssl -lcrypto  -L/scratch/00329/tg456034/ucvm_257/lib/proj/lib -lproj -lpthread conftest.c -lproj -lpthread -lm  >&5
configure:7168: $? = 0
configure:7180: result: yes
configure:7184: checking for proj.h
configure:7184: mpicc -c -I/scratch/00329/tg456034/ucvm_257/lib/curl/include/curl -I/scratch/00329/tg456034/ucvm_257/lib/openssl/include -I/scratch/00329/tg456034/ucvm_257/lib/proj/include -Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2  conftest.c >&5
configure:7184: $? = 0
configure:7184: result: yes
configure:9761: checking that generated files are newer than configure
configure:9767: result: done
configure:10130: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by UCVM config.status 25.7.0, which was
generated by GNU Autoconf 2.72.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on login4.stampede3.tacc.utexas.edu

config.status:897: creating Makefile
config.status:897: creating aux-config/Makefile
config.status:897: creating conf/Makefile
config.status:897: creating model/ucvm/Makefile
config.status:897: creating model/1d/Makefile
config.status:897: creating src/ucvm/Makefile
config.status:897: creating src/ucvm2etree/Makefile
config.status:897: creating src/ucvm2mesh/Makefile
config.status:897: creating src/grd/Makefile
config.status:897: creating src/grd2etree/Makefile
config.status:897: creating src/patch/Makefile
config.status:897: creating src/ecoalesce/Makefile
config.status:897: creating src/ecompact/Makefile
config.status:897: creating src/basin/Makefile
config.status:897: creating test/Makefile
config.status:897: creating examples/Makefile
config.status:897: creating examples/api/Makefile
config.status:897: creating examples/programs/basin/Makefile
config.status:897: creating examples/programs/etree/Makefile
config.status:897: creating examples/programs/ucvm/Makefile
config.status:897: creating examples/programs/mesh/Makefile
config.status:897: creating examples/programs/surface/Makefile
config.status:897: creating man/Makefile
config.status:897: creating src/ssh/Makefile
config.status:897: creating src/vs30/Makefile
config.status:897: creating utilities/Makefile
config.status:1069: executing depfiles commands
config.status:1146: cd src/ucvm       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd src/ucvm2etree       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd src/ucvm2mesh       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd src/grd       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd src/grd2etree       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd src/patch       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd src/ecoalesce       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd src/ecompact       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd src/basin       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd test       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd examples/api       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd src/ssh       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
config.status:1146: cd src/vs30       && sed -e '/# am--include-marker/d' Makefile         | make -f - am--depfiles
config.status:1151: $? = 0
configure:11281: WARNING: unrecognized options: --with-gctpc-lib-path

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_MPICC_set=
ac_cv_env_MPICC_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_header_etree_h=yes
ac_cv_header_fftw3_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_proj_h=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdio_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_etree_etree_open=yes
ac_cv_lib_fftw3_fftw_execute=yes
ac_cv_lib_proj_proj_create_crs_to_crs=yes
ac_cv_objext=o
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_ac_ct_CC=mpicc
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_cc_c11=
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_stdc=
ac_cv_prog_make_make_set=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} '\''/scratch/00329/tg456034/ucvm_src/ucvm/aux-config/missing'\'' aclocal-1.16'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='0'
AM_V='$(V)'
AUTOCONF='${SHELL} '\''/scratch/00329/tg456034/ucvm_src/ucvm/aux-config/missing'\'' autoconf'
AUTOHEADER='${SHELL} '\''/scratch/00329/tg456034/ucvm_src/ucvm/aux-config/missing'\'' autoheader'
AUTOMAKE='${SHELL} '\''/scratch/00329/tg456034/ucvm_src/ucvm/aux-config/missing'\'' automake-1.16'
AWK='gawk'
CC='mpicc'
CCDEPMODE='depmode=gcc3'
CENCAL_EXTMODEL=''
CENCAL_MODEL=''
CFLAGS='-Wall -O3 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/scratch/00329/tg456034/ucvm_257/lib/euclid3/include -I/scratch/00329/tg456034/ucvm_257/lib/curl/include/curl -I/scratch/00329/tg456034/ucvm_257/lib/openssl/include -I/scratch/00329/tg456034/ucvm_257/lib/proj/include -I/scratch/00329/tg456034/ucvm_257/lib/fftw/include  -I/scratch/00329/tg456034/ucvm_257/lib/hdf5/include'
CMRG_MODEL=''
CPPFLAGS=''
CSCOPE='cscope'
CTAGS='ctags'
CVMH_MODEL='/scratch/00329/tg456034/ucvm_257/model/cvmh/model'
CVMLT_MODEL=''
CVMNCI_MODEL=''
CYGPATH_W='echo'
DEFS='-DPACKAGE_NAME=\"UCVM\" -DPACKAGE_TARNAME=\"ucvm\" -DPACKAGE_VERSION=\"25.7.0\" -DPACKAGE_STRING=\"UCVM\ 25.7.0\" -DPACKAGE_BUGREPORT=\"software@scec.org\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ucvm\" -DVERSION=\"25.7.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1'
DEPDIR='.deps'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
ETAGS='etags'
EXEEXT=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LDFLAGS=' -L/scratch/00329/tg456034/ucvm_257/lib/euclid3/lib -letree -L/scratch/00329/tg456034/ucvm_257/lib/curl/lib -lcurl -L/scratch/00329/tg456034/ucvm_257/lib/openssl/lib -lssl -lcrypto -L/scratch/00329/tg456034/ucvm_257/lib/proj/lib -lproj -lpthread -L/scratch/00329/tg456034/ucvm_257/lib/fftw/lib -lfftw3  -L/scratch/00329/tg456034/ucvm_257/lib/hdf5/lib -lhdf5 -lz -ldl -lm -lm -ldl'
LIBOBJS=''
LIBS=''
LTLIBOBJS=''
MAKEINFO='${SHELL} '\''/scratch/00329/tg456034/ucvm_src/ucvm/aux-config/missing'\'' makeinfo'
MKDIR_P='/usr/bin/mkdir -p'
MPICC=''
OBJEXT='o'
PACKAGE='ucvm'
PACKAGE_BUGREPORT='software@scec.org'
PACKAGE_NAME='UCVM'
PACKAGE_STRING='UCVM 25.7.0'
PACKAGE_TARNAME='ucvm'
PACKAGE_URL=''
PACKAGE_VERSION='25.7.0'
PATH_SEPARATOR=':'
RANLIB='ranlib'
SET_MAKE=''
SHELL='/bin/sh'
STRIP=''
TAPE_MODEL=''
UCVM_AM_ENABLE_ALBACORE_FALSE='#'
UCVM_AM_ENABLE_ALBACORE_TRUE=''
UCVM_AM_ENABLE_CANVAS_FALSE='#'
UCVM_AM_ENABLE_CANVAS_TRUE=''
UCVM_AM_ENABLE_CCA_FALSE='#'
UCVM_AM_ENABLE_CCA_TRUE=''
UCVM_AM_ENABLE_CENCAL_FALSE=''
UCVM_AM_ENABLE_CENCAL_TRUE='#'
UCVM_AM_ENABLE_CMRG_FALSE=''
UCVM_AM_ENABLE_CMRG_TRUE='#'
UCVM_AM_ENABLE_CS173H_FALSE=''
UCVM_AM_ENABLE_CS173H_TRUE='#'
UCVM_AM_ENABLE_CS173_FALSE=''
UCVM_AM_ENABLE_CS173_TRUE='#'
UCVM_AM_ENABLE_CS242_FALSE=''
UCVM_AM_ENABLE_CS242_TRUE='#'
UCVM_AM_ENABLE_CS248_FALSE=''
UCVM_AM_ENABLE_CS248_TRUE='#'
UCVM_AM_ENABLE_CVLSU_FALSE='#'
UCVM_AM_ENABLE_CVLSU_TRUE=''
UCVM_AM_ENABLE_CVMHIBBN_FALSE='#'
UCVM_AM_ENABLE_CVMHIBBN_TRUE=''
UCVM_AM_ENABLE_CVMHLABN_FALSE='#'
UCVM_AM_ENABLE_CVMHLABN_TRUE=''
UCVM_AM_ENABLE_CVMHRBN_FALSE='#'
UCVM_AM_ENABLE_CVMHRBN_TRUE=''
UCVM_AM_ENABLE_CVMHSBBN_FALSE='#'
UCVM_AM_ENABLE_CVMHSBBN_TRUE=''
UCVM_AM_ENABLE_CVMHSBCBN_FALSE='#'
UCVM_AM_ENABLE_CVMHSBCBN_TRUE=''
UCVM_AM_ENABLE_CVMHSGBN_FALSE='#'
UCVM_AM_ENABLE_CVMHSGBN_TRUE=''
UCVM_AM_ENABLE_CVMHSMBN_FALSE='#'
UCVM_AM_ENABLE_CVMHSMBN_TRUE=''
UCVM_AM_ENABLE_CVMHSTBN_FALSE='#'
UCVM_AM_ENABLE_CVMHSTBN_TRUE=''
UCVM_AM_ENABLE_CVMHVBN_FALSE='#'
UCVM_AM_ENABLE_CVMHVBN_TRUE=''
UCVM_AM_ENABLE_CVMH_FALSE='#'
UCVM_AM_ENABLE_CVMH_TRUE=''
UCVM_AM_ENABLE_CVMLT_FALSE=''
UCVM_AM_ENABLE_CVMLT_TRUE='#'
UCVM_AM_ENABLE_CVMNCI_FALSE=''
UCVM_AM_ENABLE_CVMNCI_TRUE='#'
UCVM_AM_ENABLE_CVMS5_FALSE='#'
UCVM_AM_ENABLE_CVMS5_TRUE=''
UCVM_AM_ENABLE_CVMSI_FALSE='#'
UCVM_AM_ENABLE_CVMSI_TRUE=''
UCVM_AM_ENABLE_CVMS_FALSE='#'
UCVM_AM_ENABLE_CVMS_TRUE=''
UCVM_AM_ENABLE_IVLSU_FALSE='#'
UCVM_AM_ENABLE_IVLSU_TRUE=''
UCVM_AM_ENABLE_SFCVM_FALSE='#'
UCVM_AM_ENABLE_SFCVM_TRUE=''
UCVM_AM_ENABLE_SJFZ_FALSE='#'
UCVM_AM_ENABLE_SJFZ_TRUE=''
UCVM_AM_ENABLE_TAPE_FALSE=''
UCVM_AM_ENABLE_TAPE_TRUE='#'
UCVM_AM_ENABLE_UWLINCA_FALSE='#'
UCVM_AM_ENABLE_UWLINCA_TRUE=''
UCVM_AM_ENABLE_UWSFBCVM_FALSE='#'
UCVM_AM_ENABLE_UWSFBCVM_TRUE=''
UCVM_AM_ENABLE_WFCVM_FALSE='#'
UCVM_AM_ENABLE_WFCVM_TRUE=''
UCVM_AM_STATIC_FALSE=''
UCVM_AM_STATIC_TRUE='#'
UCVM_HAVE_HDF5_FALSE=''
UCVM_HAVE_HDF5_TRUE='#'
UCVM_HAVE_MPI_FALSE='#'
UCVM_HAVE_MPI_TRUE=''
UCVM_HAVE_NETCDF_FALSE=''
UCVM_HAVE_NETCDF_TRUE='#'
UCVM_ON_USC_DISCOVERY_FALSE=''
UCVM_ON_USC_DISCOVERY_TRUE='#'
USER_LINUX_FALSE='#'
USER_LINUX_TRUE=''
USER_MAC_FALSE=''
USER_MAC_TRUE='#'
VERSION='25.7.0'
ac_ct_CC='mpicc'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-pc-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /scratch/00329/tg456034/ucvm_src/ucvm/aux-config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/scratch/00329/tg456034/ucvm_257'
program_transform_name='s,x,x,'
psdir='${docdir}'
runstatedir='${localstatedir}/run'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "UCVM"
#define PACKAGE_TARNAME "ucvm"
#define PACKAGE_VERSION "25.7.0"
#define PACKAGE_STRING "UCVM 25.7.0"
#define PACKAGE_BUGREPORT "software@scec.org"
#define PACKAGE_URL ""
#define PACKAGE "ucvm"
#define VERSION "25.7.0"
#define HAVE_STDIO_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_STRINGS_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_UNISTD_H 1
#define STDC_HEADERS 1

configure: exit 0
All Flag: True
dynamic Flag: True

UCVM 25.7.0 Installation
Copyright (C) 2025 University of Southern California. All rights reserved.
Using local setup.list and system.list ....
Now check system specific conditions.
System_data - k:  h2ologin
System_data - k:  all
Using local setup.list file

Please answer the following questions to install UCVM.

Note that this install and build process may take up to an hour depending on your
computer speed.

You have indicated that you would like to install
CVM-S4.26, CCA, CVM-S4, CVM-S4.26.M01, CVM-H, ALBACORE, COACHELLA, IMPERIAL, WFCVM, CVMHLABN, CVMHSGBN, CVMHVBN, CVMHIBBN, CVMHRBN, CVMHSTBN, CVMHSBBN, CVMHSBCBN, CVMHSMBN, SFCVM, UWLINCA, SJFZ, CANVAS, and UWSFBCVM

You have indicated that you would like to install
FFTW, Euclid3, HDF5, OpenSSL, TIFF, Sqlite, Curl, and Proj

Now setting up the required UCVM libraries...

 CHECKING on  FFTW
Calling URL Install with tarname,ucvmpath: fftw-3.3.3.tar.gz /scratch/00329/tg456034/ucvm_257

Installing library fftw-3.3.3.tar.gz
Decompressing library
  ==> command used.. mkdir_-p_./work/lib/fftw
  ==> command used.. tar_zxvf_./work/lib/fftw-3.3.3.tar.gz_-C_./work/lib/fftw_--strip_1
  ==> command used.. cd_./work/lib/fftw

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/lib/fftw_--enable-fortran=no

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm

 CHECKING on  Euclid3
Calling URL Install with tarname,ucvmpath: euclid3-1.3.tar.gz /scratch/00329/tg456034/ucvm_257

Installing library euclid3-1.3.tar.gz
Decompressing library
  ==> command used.. mkdir_-p_./work/lib/euclid3
  ==> command used.. tar_zxvf_./work/lib/euclid3-1.3.tar.gz_-C_./work/lib/euclid3_--strip_2
  ==> command used.. cd_./work/lib/euclid3

Running aclocal
  ==> command used.. aclocal

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/lib/euclid3

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm

 CHECKING on  HDF5
Calling URL Install with tarname,ucvmpath: hdf5-1.10.9.tar.gz /scratch/00329/tg456034/ucvm_257

Installing library hdf5-1.10.9.tar.gz
Decompressing library
  ==> command used.. mkdir_-p_./work/lib/hdf5
  ==> command used.. tar_zxvf_./work/lib/hdf5-1.10.9.tar.gz_-C_./work/lib/hdf5_--strip_2
  ==> command used.. cd_./work/lib/hdf5

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/lib/hdf5

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm

 CHECKING on  OpenSSL
Calling URL Install with tarname,ucvmpath: openssl-3.0.8.tar.gz /scratch/00329/tg456034/ucvm_257

Installing library openssl-3.0.8.tar.gz
Decompressing library
  ==> command used.. mkdir_-p_./work/lib/openssl
  ==> command used.. tar_zxvf_./work/lib/openssl-3.0.8.tar.gz_-C_./work/lib/openssl_--strip_2
  ==> command used.. cd_./work/lib/openssl

No need to configure --  openssl

Running ./configure
  ==> command used.. ./Configure_--prefix=/scratch/00329/tg456034/ucvm_257/lib/openssl_--libdir=lib

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm

 CHECKING on  TIFF
Calling URL Install with tarname,ucvmpath: tiff-4.5.0.tar.gz /scratch/00329/tg456034/ucvm_257

Installing library tiff-4.5.0.tar.gz
Decompressing library
  ==> command used.. mkdir_-p_./work/lib/tiff
  ==> command used.. tar_zxvf_./work/lib/tiff-4.5.0.tar.gz_-C_./work/lib/tiff_--strip_2
  ==> command used.. cd_./work/lib/tiff

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/lib/tiff_--disable-test_--disable-jpeg_--disable-contrib_--disable-docs_--disable-ccitt_--disable-mdi_--disable-webp_--disable-zstd_--disable-tools_--disable-win32-io

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm

 CHECKING on  Sqlite
Calling URL Install with tarname,ucvmpath: sqlite-autoconf-3400100.tar.gz /scratch/00329/tg456034/ucvm_257

Installing library sqlite-autoconf-3400100.tar.gz
Decompressing library
  ==> command used.. mkdir_-p_./work/lib/sqlite
  ==> command used.. tar_zxvf_./work/lib/sqlite-autoconf-3400100.tar.gz_-C_./work/lib/sqlite_--strip_2
  ==> command used.. cd_./work/lib/sqlite

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/lib/sqlite_CFLAGS=-DSQLITE_ENABLE_COLUMN_METADATA

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm

 CHECKING on  Curl
Calling URL Install with tarname,ucvmpath: curl-7.87.0.tar.gz /scratch/00329/tg456034/ucvm_257

Installing library curl-7.87.0.tar.gz
Decompressing library
  ==> command used.. mkdir_-p_./work/lib/curl
  ==> command used.. tar_zxvf_./work/lib/curl-7.87.0.tar.gz_-C_./work/lib/curl_--strip_2
  ==> command used.. cd_./work/lib/curl

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/lib/curl_--with-openssl=/scratch/00329/tg456034/ucvm_257/lib/openssl

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm

 CHECKING on  Proj
Calling URL Install with tarname,ucvmpath: proj-8.1.1.tar.gz /scratch/00329/tg456034/ucvm_257

Installing library proj-8.1.1.tar.gz
Decompressing library
  ==> command used.. mkdir_-p_./work/lib/proj
  ==> command used.. tar_zxvf_./work/lib/proj-8.1.1.tar.gz_-C_./work/lib/proj_--strip_2
  ==> command used.. cd_./work/lib/proj

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/lib/proj_--enable-tiff_--without-curl_TIFF_LIBS='-L/scratch/00329/tg456034/ucvm_257/lib/tiff/lib_-ltiff_-L/scratch/00329/tg456034/ucvm_257/lib/openssl/lib_-lcrypto_-lssl'_TIFF_CFLAGS='-I/scratch/00329/tg456034/ucvm_257/lib/tiff/include'_SQLITE3_CFLAGS='-I/scratch/00329/tg456034/ucvm_257/lib/sqlite/include'_SQLITE3_LIBS='-L/scratch/00329/tg456034/ucvm_257/lib/sqlite/lib_-lsqlite3'_SQLITE3='/scratch/00329/tg456034/ucvm_257/lib/sqlite/bin/sqlite3'

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Decompressing add on data
  ==> command used.. tar_zxvf_./work/ref/proj-data-1.11.tar.gz_-C_/scratch/00329/tg456034/ucvm_257/lib/proj/share/proj

Now setting up CVM models...
Install model_name:  UWSFBCVM
Preparing to install model with tarname:  uwsfbcvm.tar.gz
Model tar file found in work directory: ./work/model/uwsfbcvm.tar.gz

Installing model uwsfbcvm.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/uwsfbcvm
  ==> command used.. tar_zxvf_./work/model/uwsfbcvm.tar.gz_-C_./work/model/uwsfbcvm_--strip_2
  ==> command used.. pip_install_certifi
  ==> command used.. cd_./work/model/uwsfbcvm

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/uwsfbcvm

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CANVAS
Preparing to install model with tarname:  canvas.tar.gz
Model tar file found in work directory: ./work/model/canvas.tar.gz

Installing model canvas.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/canvas
  ==> command used.. tar_zxvf_./work/model/canvas.tar.gz_-C_./work/model/canvas_--strip_2
  ==> command used.. cd_./work/model/canvas

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/canvas

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  SJFZ
Preparing to install model with tarname:  sjfz.tar.gz
Model tar file found in work directory: ./work/model/sjfz.tar.gz

Installing model sjfz.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/sjfz
  ==> command used.. tar_zxvf_./work/model/sjfz.tar.gz_-C_./work/model/sjfz_--strip_2
  ==> command used.. cd_./work/model/sjfz

Running aclocal
  ==> command used.. aclocal

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/sjfz

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  UWLINCA
Preparing to install model with tarname:  uwlinca.tar.gz
Model tar file found in work directory: ./work/model/uwlinca.tar.gz

Installing model uwlinca.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/uwlinca
  ==> command used.. tar_zxvf_./work/model/uwlinca.tar.gz_-C_./work/model/uwlinca_--strip_2
  ==> command used.. cd_./work/model/uwlinca

Running libtoolize
  ==> command used.. libtoolize

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/uwlinca_--with-proj-libdir=/scratch/00329/tg456034/ucvm_257/lib/proj/lib_--with-proj-incdir=/scratch/00329/tg456034/ucvm_257/lib/proj/include_--with-tiff-libdir=/scratch/00329/tg456034/ucvm_257/lib/tiff/lib_--with-tiff-incdir=/scratch/00329/tg456034/ucvm_257/lib/tiff/include_--with-sqlite-libdir=/scratch/00329/tg456034/ucvm_257/lib/sqlite/lib_--with-sqlite-incdir=/scratch/00329/tg456034/ucvm_257/lib/sqlite/include

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  SFCVM
Preparing to install model with tarname:  sfcvm.tar.gz
Model tar file found in work directory: ./work/model/sfcvm.tar.gz

Installing model sfcvm.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/sfcvm
  ==> command used.. tar_zxvf_./work/model/sfcvm.tar.gz_-C_./work/model/sfcvm_--strip_2
  ==> command used.. pip_install_pybind11_numpy_h5py
Decompressing add on data
  ==> command used.. tar_zxvf_./work/ref/geomodelgrids.tar.gz_-C_./work/model/sfcvm/dependencies
  ==> command used.. cd_./work/model/sfcvm

Running libtoolize
  ==> command used.. libtoolize

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoreconf
  ==> command used.. autoreconf_-i_-f

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/sfcvm

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVMHSMBN
Preparing to install model with tarname:  cvmhsmbn.tar.gz
Model tar file found in work directory: ./work/model/cvmhsmbn.tar.gz

Installing model cvmhsmbn.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmhsmbn
  ==> command used.. tar_zxvf_./work/model/cvmhsmbn.tar.gz_-C_./work/model/cvmhsmbn_--strip_2
  ==> command used.. cd_./work/model/cvmhsmbn

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmhsmbn

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVMHSBCBN
Preparing to install model with tarname:  cvmhsbcbn.tar.gz
Model tar file found in work directory: ./work/model/cvmhsbcbn.tar.gz

Installing model cvmhsbcbn.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmhsbcbn
  ==> command used.. tar_zxvf_./work/model/cvmhsbcbn.tar.gz_-C_./work/model/cvmhsbcbn_--strip_2
  ==> command used.. cd_./work/model/cvmhsbcbn

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmhsbcbn

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVMHSBBN
Preparing to install model with tarname:  cvmhsbbn.tar.gz
Model tar file found in work directory: ./work/model/cvmhsbbn.tar.gz

Installing model cvmhsbbn.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmhsbbn
  ==> command used.. tar_zxvf_./work/model/cvmhsbbn.tar.gz_-C_./work/model/cvmhsbbn_--strip_2
  ==> command used.. cd_./work/model/cvmhsbbn

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmhsbbn

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVMHSTBN
Preparing to install model with tarname:  cvmhstbn.tar.gz
Model tar file found in work directory: ./work/model/cvmhstbn.tar.gz

Installing model cvmhstbn.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmhstbn
  ==> command used.. tar_zxvf_./work/model/cvmhstbn.tar.gz_-C_./work/model/cvmhstbn_--strip_2
  ==> command used.. cd_./work/model/cvmhstbn

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmhstbn

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVMHRBN
Preparing to install model with tarname:  cvmhrbn.tar.gz
Model tar file found in work directory: ./work/model/cvmhrbn.tar.gz

Installing model cvmhrbn.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmhrbn
  ==> command used.. tar_zxvf_./work/model/cvmhrbn.tar.gz_-C_./work/model/cvmhrbn_--strip_2
  ==> command used.. cd_./work/model/cvmhrbn

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmhrbn

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVMHIBBN
Preparing to install model with tarname:  cvmhibbn.tar.gz
Model tar file found in work directory: ./work/model/cvmhibbn.tar.gz

Installing model cvmhibbn.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmhibbn
  ==> command used.. tar_zxvf_./work/model/cvmhibbn.tar.gz_-C_./work/model/cvmhibbn_--strip_2
  ==> command used.. cd_./work/model/cvmhibbn

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmhibbn

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVMHVBN
Preparing to install model with tarname:  cvmhvbn.tar.gz
Model tar file found in work directory: ./work/model/cvmhvbn.tar.gz

Installing model cvmhvbn.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmhvbn
  ==> command used.. tar_zxvf_./work/model/cvmhvbn.tar.gz_-C_./work/model/cvmhvbn_--strip_2
  ==> command used.. cd_./work/model/cvmhvbn

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmhvbn

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVMHSGBN
Preparing to install model with tarname:  cvmhsgbn.tar.gz
Model tar file found in work directory: ./work/model/cvmhsgbn.tar.gz

Installing model cvmhsgbn.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmhsgbn
  ==> command used.. tar_zxvf_./work/model/cvmhsgbn.tar.gz_-C_./work/model/cvmhsgbn_--strip_2
  ==> command used.. cd_./work/model/cvmhsgbn

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmhsgbn

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVMHLABN
Preparing to install model with tarname:  cvmhlabn.tar.gz
Model tar file found in work directory: ./work/model/cvmhlabn.tar.gz

Installing model cvmhlabn.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmhlabn
  ==> command used.. tar_zxvf_./work/model/cvmhlabn.tar.gz_-C_./work/model/cvmhlabn_--strip_2
  ==> command used.. cd_./work/model/cvmhlabn

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmhlabn

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  WFCVM
Preparing to install model with tarname:  wfcvm.tar.gz
Model tar file found in work directory: ./work/model/wfcvm.tar.gz

Installing model wfcvm.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/wfcvm
  ==> command used.. tar_zxvf_./work/model/wfcvm.tar.gz_-C_./work/model/wfcvm_--strip_2
  ==> command used.. cd_./work/model/wfcvm

Running aclocal
  ==> command used.. aclocal

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/wfcvm

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  IMPERIAL
Preparing to install model with tarname:  ivlsu.tar.gz
Model tar file found in work directory: ./work/model/ivlsu.tar.gz

Installing model ivlsu.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/ivlsu
  ==> command used.. tar_zxvf_./work/model/ivlsu.tar.gz_-C_./work/model/ivlsu_--strip_2
  ==> command used.. cd_./work/model/ivlsu

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/ivlsu_--with-proj-libdir=/scratch/00329/tg456034/ucvm_257/lib/proj/lib_--with-proj-incdir=/scratch/00329/tg456034/ucvm_257/lib/proj/include_--with-tiff-libdir=/scratch/00329/tg456034/ucvm_257/lib/tiff/lib_--with-tiff-incdir=/scratch/00329/tg456034/ucvm_257/lib/tiff/include_--with-sqlite-libdir=/scratch/00329/tg456034/ucvm_257/lib/sqlite/lib_--with-sqlite-incdir=/scratch/00329/tg456034/ucvm_257/lib/sqlite/include

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  COACHELLA
Preparing to install model with tarname:  cvlsu.tar.gz
Model tar file found in work directory: ./work/model/cvlsu.tar.gz

Installing model cvlsu.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvlsu
  ==> command used.. tar_zxvf_./work/model/cvlsu.tar.gz_-C_./work/model/cvlsu_--strip_2
  ==> command used.. cd_./work/model/cvlsu

Running aclocal
  ==> command used.. aclocal

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvlsu

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  ALBACORE
Preparing to install model with tarname:  albacore.tar.gz
Model tar file found in work directory: ./work/model/albacore.tar.gz

Installing model albacore.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/albacore
  ==> command used.. tar_zxvf_./work/model/albacore.tar.gz_-C_./work/model/albacore_--strip_2
  ==> command used.. cd_./work/model/albacore

Running aclocal
  ==> command used.. aclocal

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/albacore

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVM-H
Preparing to install model with tarname:  cvmh.tar.gz
Model tar file found in work directory: ./work/model/cvmh.tar.gz

Installing model cvmh.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmh
  ==> command used.. tar_zxvf_./work/model/cvmh.tar.gz_-C_./work/model/cvmh_--strip_2
  ==> command used.. cd_./work/model/cvmh

Running libtoolize
  ==> command used.. libtoolize

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmh

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVM-S4.26.M01
Preparing to install model with tarname:  cvmsi.tar.gz
Model tar file found in work directory: ./work/model/cvmsi.tar.gz

Installing model cvmsi.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvmsi
  ==> command used.. tar_zxvf_./work/model/cvmsi.tar.gz_-C_./work/model/cvmsi_--strip_2
  ==> command used.. cd_./work/model/cvmsi

Running aclocal
  ==> command used.. aclocal

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvmsi

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVM-S4
Preparing to install model with tarname:  cvms.tar.gz
Model tar file found in work directory: ./work/model/cvms.tar.gz

Installing model cvms.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvms
  ==> command used.. tar_zxvf_./work/model/cvms.tar.gz_-C_./work/model/cvms_--strip_2
  ==> command used.. cd_./work/model/cvms

Running aclocal
  ==> command used.. aclocal

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvms

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CCA
Preparing to install model with tarname:  cca.tar.gz
Model tar file found in work directory: ./work/model/cca.tar.gz

Installing model cca.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cca
  ==> command used.. tar_zxvf_./work/model/cca.tar.gz_-C_./work/model/cca_--strip_2
  ==> command used.. cd_./work/model/cca

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoreconf
  ==> command used.. autoreconf_-i_-f

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cca_--with-etree-libdir=/scratch/00329/tg456034/ucvm_257/lib/euclid3/lib_--with-etree-incdir=/scratch/00329/tg456034/ucvm_257/lib/euclid3/include__--with-proj-libdir=/scratch/00329/tg456034/ucvm_257/lib/proj/lib_--with-proj-incdir=/scratch/00329/tg456034/ucvm_257/lib/proj/include_--with-tiff-libdir=/scratch/00329/tg456034/ucvm_257/lib/tiff/lib_--with-tiff-incdir=/scratch/00329/tg456034/ucvm_257/lib/tiff/include_--with-sqlite-libdir=/scratch/00329/tg456034/ucvm_257/lib/sqlite/lib_--with-sqlite-incdir=/scratch/00329/tg456034/ucvm_257/lib/sqlite/include

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm
Install model_name:  CVM-S4.26
Preparing to install model with tarname:  cvms5.tar.gz
Model tar file found in work directory: ./work/model/cvms5.tar.gz

Installing model cvms5.tar.gz
Decompressing model
  ==> command used.. mkdir_-p_./work/model/cvms5
  ==> command used.. tar_zxvf_./work/model/cvms5.tar.gz_-C_./work/model/cvms5_--strip_2
  ==> command used.. cd_./work/model/cvms5

Running libtoolize
  ==> command used.. libtoolize

Running aclocal
  ==> command used.. aclocal_-I_m4

Running autoconf
  ==> command used.. autoconf

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running ./configure
  ==> command used.. ./configure_--prefix=/scratch/00329/tg456034/ucvm_257/model/cvms5_--with-etree-libdir=/scratch/00329/tg456034/ucvm_257/lib/euclid3/lib_--with-etree-incdir=/scratch/00329/tg456034/ucvm_257/lib/euclid3/include__--with-proj-libdir=/scratch/00329/tg456034/ucvm_257/lib/proj/lib_--with-proj-incdir=/scratch/00329/tg456034/ucvm_257/lib/proj/include_--with-tiff-libdir=/scratch/00329/tg456034/ucvm_257/lib/tiff/lib_--with-tiff-incdir=/scratch/00329/tg456034/ucvm_257/lib/tiff/include_--with-sqlite-libdir=/scratch/00329/tg456034/ucvm_257/lib/sqlite/lib_--with-sqlite-incdir=/scratch/00329/tg456034/ucvm_257/lib/sqlite/include

Running make clean
  ==> command used.. make_clean

Running make
  ==> command used.. make

Installing...
  ==> command used.. make_install
  ==> command used.. cd_/scratch/00329/tg456034/ucvm_src/ucvm

Installing UCVM software...

Running aclocal
  ==> command used.. aclocal_-I_./m4

Running automake
  ==> command used.. automake_--add-missing_--force-missing

Running autoconf
  ==> command used.. autoconf

Running ./configure for UCVM
no need to add dynamic flag
  ==> command used.. ./configure_--enable-silent-rules_--with-fftw-include-path=/scratch/00329/tg456034/ucvm_257/lib/fftw/include_--with-fftw-lib-path=/scratch/00329/tg456034/ucvm_257/lib/fftw/lib_--with-etree-include-path=/scratch/00329/tg456034/ucvm_257/lib/euclid3/include_--with-etree-lib-path=/scratch/00329/tg456034/ucvm_257/lib/euclid3/lib_--with-hdf5-include-path=/scratch/00329/tg456034/ucvm_257/lib/hdf5/include_--with-hdf5-lib-path=/scratch/00329/tg456034/ucvm_257/lib/hdf5/lib_--with-openssl-include-path=/scratch/00329/tg456034/ucvm_257/lib/openssl/include_--with-openssl-lib-path=/scratch/00329/tg456034/ucvm_257/lib/openssl/lib_--with-tiff-include-path=/scratch/00329/tg456034/ucvm_257/lib/tiff/include_--with-tiff-lib-path=/scratch/00329/tg456034/ucvm_257/lib/tiff/lib_--with-sqlite-include-path=/scratch/00329/tg456034/ucvm_257/lib/sqlite/include_--with-sqlite-lib-path=/scratch/00329/tg456034/ucvm_257/lib/sqlite/lib_--with-curl-include-path=/scratch/00329/tg456034/ucvm_257/lib/curl/include/curl_--with-curl-lib-path=/scratch/00329/tg456034/ucvm_257/lib/curl/lib_--with-proj-include-path=/scratch/00329/tg456034/ucvm_257/lib/proj/include_--with-proj-lib-path=/scratch/00329/tg456034/ucvm_257/lib/proj/lib_--enable-model-cvms5_--with-cvms5-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvms5/lib_--with-cvms5-include-path=/scratch/00329/tg456034/ucvm_257/model/cvms5/include_--enable-model-cca_--with-cca-lib-path=/scratch/00329/tg456034/ucvm_257/model/cca/lib_--with-cca-include-path=/scratch/00329/tg456034/ucvm_257/model/cca/include_--enable-model-cvms_--with-cvms-include-path=/scratch/00329/tg456034/ucvm_257/model/cvms/include_--with-cvms-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvms/lib_--with-cvms-model-path=/scratch/00329/tg456034/ucvm_257/model/cvms/data/cvms_--enable-model-cvmsi_--with-cvmsi-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmsi/lib_--with-cvmsi-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmsi/include_--with-cvmsi-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmsi/data/i26_--enable-model-cvmh_--with-gctpc-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmh/lib_--with-cvmh-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmh/lib_--with-cvmh-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmh/include_--with-cvmh-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmh/model_--enable-model-albacore_--with-albacore-lib-path=/scratch/00329/tg456034/ucvm_257/model/albacore/lib_--with-albacore-include-path=/scratch/00329/tg456034/ucvm_257/model/albacore/include_--enable-model-cvlsu_--with-cvlsu-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvlsu/lib_--with-cvlsu-include-path=/scratch/00329/tg456034/ucvm_257/model/cvlsu/include_--enable-model-ivlsu_--with-ivlsu-lib-path=/scratch/00329/tg456034/ucvm_257/model/ivlsu/lib_--with-ivlsu-include-path=/scratch/00329/tg456034/ucvm_257/model/ivlsu/include_--enable-model-wfcvm_--with-wfcvm-lib-path=/scratch/00329/tg456034/ucvm_257/model/wfcvm/lib_--with-wfcvm-include-path=/scratch/00329/tg456034/ucvm_257/model/wfcvm/include_--with-wfcvm-model-path=/scratch/00329/tg456034/ucvm_257/model/wfcvm/src_--enable-model-cvmhlabn_--with-cvmhlabn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhlabn/lib_--with-cvmhlabn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhlabn/include_--with-cvmhlabn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhlabn/data/cvmhlabn_--enable-model-cvmhsgbn_--with-cvmhsgbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsgbn/lib_--with-cvmhsgbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsgbn/include_--with-cvmhsgbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsgbn/data/cvmhsgbn_--enable-model-cvmhvbn_--with-cvmhvbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhvbn/lib_--with-cvmhvbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhvbn/include_--with-cvmhvbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhvbn/data/cvmhvbn_--enable-model-cvmhibbn_--with-cvmhibbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhibbn/lib_--with-cvmhibbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhibbn/include_--with-cvmhibbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhibbn/data/cvmhibbn_--enable-model-cvmhrbn_--with-cvmhrbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhrbn/lib_--with-cvmhrbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhrbn/include_--with-cvmhrbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhrbn/data/cvmhrbn_--enable-model-cvmhstbn_--with-cvmhstbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhstbn/lib_--with-cvmhstbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhstbn/include_--with-cvmhstbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhstbn/data/cvmhstbn_--enable-model-cvmhsbbn_--with-cvmhsbbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbbn/lib_--with-cvmhsbbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbbn/include_--with-cvmhsbbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbbn/data/cvmhsbbn_--enable-model-cvmhsbcbn_--with-cvmhsbcbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbcbn/lib_--with-cvmhsbcbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbcbn/include_--with-cvmhsbcbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsbcbn/data/cvmhsbcbn_--enable-model-cvmhsmbn_--with-cvmhsmbn-lib-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsmbn/lib_--with-cvmhsmbn-include-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsmbn/include_--with-cvmhsmbn-model-path=/scratch/00329/tg456034/ucvm_257/model/cvmhsmbn/data/cvmhsmbn_--enable-model-sfcvm_--with-sfcvm-lib-path=/scratch/00329/tg456034/ucvm_257/model/sfcvm/lib_--with-sfcvm-include-path=/scratch/00329/tg456034/ucvm_257/model/sfcvm/include_--with-sfcvm-model-path=/scratch/00329/tg456034/ucvm_257/model/sfcvm/data/sfcvm_--enable-model-uwlinca_--with-uwlinca-lib-path=/scratch/00329/tg456034/ucvm_257/model/uwlinca/lib_--with-uwlinca-include-path=/scratch/00329/tg456034/ucvm_257/model/uwlinca/include_--enable-model-sjfz_--with-sjfz-lib-path=/scratch/00329/tg456034/ucvm_257/model/sjfz/lib_--with-sjfz-include-path=/scratch/00329/tg456034/ucvm_257/model/sjfz/include_--enable-model-canvas_--with-canvas-lib-path=/scratch/00329/tg456034/ucvm_257/model/canvas/lib_--with-canvas-include-path=/scratch/00329/tg456034/ucvm_257/model/canvas/include_--enable-model-uwsfbcvm_--with-uwsfbcvm-lib-path=/scratch/00329/tg456034/ucvm_257/model/uwsfbcvm/lib_--with-uwsfbcvm-include-path=/scratch/00329/tg456034/ucvm_257/model/uwsfbcvm/include_--prefix=/scratch/00329/tg456034/ucvm_257

Making UCVM
  ==> command used.. make_clean
  ==> command used.. make

Installing UCVM
  ==> command used.. make_install

Done installing UCVM!

Thank you for installing UCVM.
Now edit your ~/.bashrc file to call /scratch/00329/tg456034/ucvm_257/conf/ucvm_env.sh 

   source /scratch/00329/tg456034/ucvm_257/conf/ucvm_env.sh 

This will set the required UCVM environment variables.
Then log out, and log in, move to tests directory, and run the tests

   $ cd /scratch/00329/tg456034/ucvm_257/tests 
   $ ./run-testing 

This will run the UCVM unit and acceptance tests. If all tests pass, 
UCVM is correctly installed and ready to use on your computer.
To try out ucvm, once the tests pass, run an example query.

   $ ucvm_query -f /scratch/00329/tg456034/ucvm_257/conf/ucvm.conf -m cvms < /scratch/00329/tg456034/ucvm_257/tests/inputs/test_latlons.txt

You will then see the following output:

Using Geo Depth coordinates as default mode.
 -118.0000    34.0000      0.000    280.896    390.000       cvms    696.491    213.000   1974.976       none      0.000      0.000      0.000      crust    696.491    213.000   1974.976
 -118.0000    34.0000     50.000    280.896    390.000       cvms   1669.540    548.000   2128.620       none      0.000      0.000      0.000      crust   1669.540    548.000   2128.620
 -118.0000    34.0000    100.000    280.896    390.000       cvms   1683.174    603.470   2130.773       none      0.000      0.000      0.000      crust   1683.174    603.470   2130.773
-118.0000    34.0000    500.000    280.896    390.000       cvms   3097.562   1656.495   2354.105       none      0.000      0.000      0.000      crust   3097.562   1656.495   2354.105
 -118.0000    34.0000   1000.000    280.896    390.000       cvms   3660.809   2056.628   2443.042       none      0.000      0.000      0.000      crust   3660.809   2056.628   2443.042

Installation complete. Installation log file saved at ./setup_log.sh