Difference between revisions of "UCVM Install Stampede3"
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== MPI Tests == | == MPI Tests == | ||
| + | * Simple basin_query_mpi Tests | ||
| + | The first two tests required the basin_query_mpi executable, and the cvms5 model. The tests extract some basin depth values from a model. | ||
| + | It then compares the extracted data from expected data that is included in input file | ||
| + | The command used is: | ||
| + | <pre> | ||
| − | + | login1.stampede3(1761)$ basin_query_mpi -h | |
| − | * Test on 1 node with two tasks on one node | + | Usage: basin_query_mpi [-h] [-b outfile] [-m models<:ifunc>] [-f config] [-d max_depth] [-i inter] [-v vs_thresh] [-l lon,lat] [-s spacing] [-x num lon pts] [-y num lat pts] |
| − | * Test on 2 nodes with one task per node for a total of two tasks | + | |
| + | where: | ||
| + | -b Binary output to file. | ||
| + | -h This help message | ||
| + | -f Configuration file. Default is ./ucvm.conf. | ||
| + | -i Interval between query points along z-axis (m, default is 20.0) | ||
| + | -m Comma delimited list of crustal/GTL models to query in order | ||
| + | -v Vs threshold (m/s, default is 1000.0). | ||
| + | -l Bottom-left lat,lon separated by comma. | ||
| + | -s Grid spacing. | ||
| + | -x Number of longitude points. | ||
| + | -y Number of latitude points. | ||
| + | Notes: | ||
| + | - If running interactively, type Cntl-D to end input coord list. | ||
| + | |||
| + | Version: 25.7. | ||
| + | |||
| + | </pre> | ||
| + | |||
| + | <pre> | ||
| + | ibrun ${UCVM_INSTALL_PATH}/bin/basin_query_mpi -b ./${TEST}.simple \ | ||
| + | -f ${UCVM_INSTALL_PATH}/conf/ucvm.conf -m cvms5 -i 20 -v 2500 -l 35.0,-122.5 -s 0.1 -x 16 -y 11 | ||
| + | |||
| + | These parameters mean: | ||
| + | -b output binary file | ||
| + | -m use model cvms5 | ||
| + | -i interval between query points 20m | ||
| + | -v find depth to Vs2500 | ||
| + | -l bottom left of region to search | ||
| + | -s grid spacing in degree | ||
| + | -x number of lat points | ||
| + | -y number of lon points | ||
| + | </pre> | ||
| + | * twotasks_onenode.slurm - Test on 1 node with two tasks on one node | ||
| + | * twotasks_twonodes.slurm - Test on 2 nodes with one task per node for a total of two tasks | ||
| + | |||
| + | == Simple ucvm2mesh_mpi tests == | ||
Revision as of 01:59, 9 July 2025
We installed and tested UCVM_25_7 on Stampede3
Contents
Modules used on Stampede3
login4.stampede3(1151)$ module list Currently Loaded Modules: 1) intel/24.0 2) impi/21.11 3) autotools/1.4 4) cmake/3.31.5 5) xalt/3.1.1 6) python/3.9.18 7) TACC
Define Install Parameters
- These are defined only during installation. The will be defined at run-time when the
- ucvm_env.sh is run
export UCVM_SRC_PATH=$WORK/ucvm_src/ucvm export UCVM_INSTALL_PATH=$WORK/ucvm_257
Install commands
# Unbuffer python log files so results are visible during build export PYTHONUNBUFFERED=TRUE # # #Automatically sets up UCVMC and alerts the user to potential complications. #
Install issue
Runnning test test_ssh_generate
Traceback (most recent call last):
File "/work2/00329/tg456034/stampede3/ucvm_257/tests/./accept_test.py", line 84, in <module>
if eval("%s('%s')" % (func, sys.argv[1])) == 0:
File "<string>", line 1, in <module>
File "/work2/00329/tg456034/stampede3/ucvm_257/tests/./accept_test.py", line 55, in test_ssh_generate
generatedfloats.fromfile(f, 100 * 100 * 100)
EOFError: read() didn't return enough bytes
make[1]: *** [Makefile:723: check] Error 1
make[1]: Leaving directory '/scratch/00329/tg456034/ucvm_src/ucvm/test'
make: *** [Makefile:373: check-recursive] Error 1
- -s --static Use static linking.
- -d --dynamic Use dynamic linking.
- -a --all Use all available models.
- -r --restart This is a restart of ucvm_setup.py call.
- -p --path use supplied installation path.
- -h --help usage.
- UCVMC 25.7.0
./ucvm_setup.py -a -d -p your-ucvm-install-path >& ucvm_setup_install.log &
Determine if MPI executable were built
After the ucvm_env.sh is run, you can dtermine if mpi executable were built by running an mpi command % basin_query_mpi
GitHub UCVM Info Page
Update the link on github page from this to a replacement: https://www.scec.org/research/ucvm
Unit Test and Accept Test
% make check
MPI Tests
- Simple basin_query_mpi Tests
The first two tests required the basin_query_mpi executable, and the cvms5 model. The tests extract some basin depth values from a model. It then compares the extracted data from expected data that is included in input file The command used is:
login1.stampede3(1761)$ basin_query_mpi -h Usage: basin_query_mpi [-h] [-b outfile] [-m models<:ifunc>] [-f config] [-d max_depth] [-i inter] [-v vs_thresh] [-l lon,lat] [-s spacing] [-x num lon pts] [-y num lat pts] where: -b Binary output to file. -h This help message -f Configuration file. Default is ./ucvm.conf. -i Interval between query points along z-axis (m, default is 20.0) -m Comma delimited list of crustal/GTL models to query in order -v Vs threshold (m/s, default is 1000.0). -l Bottom-left lat,lon separated by comma. -s Grid spacing. -x Number of longitude points. -y Number of latitude points. Notes: - If running interactively, type Cntl-D to end input coord list. Version: 25.7.
ibrun ${UCVM_INSTALL_PATH}/bin/basin_query_mpi -b ./${TEST}.simple \
-f ${UCVM_INSTALL_PATH}/conf/ucvm.conf -m cvms5 -i 20 -v 2500 -l 35.0,-122.5 -s 0.1 -x 16 -y 11
These parameters mean:
-b output binary file
-m use model cvms5
-i interval between query points 20m
-v find depth to Vs2500
-l bottom left of region to search
-s grid spacing in degree
-x number of lat points
-y number of lon points
- twotasks_onenode.slurm - Test on 1 node with two tasks on one node
- twotasks_twonodes.slurm - Test on 2 nodes with one task per node for a total of two tasks
