Difference between revisions of "CyberShake Study Database Archiving"
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The following procedure should be used when we want to archive a study which is either in the production or data access database to disk, to free up room in the database. | The following procedure should be used when we want to archive a study which is either in the production or data access database to disk, to free up room in the database. | ||
− | #Dump the | + | First, dump the old database contents: |
+ | |||
+ | #Determine the Study ID you want to archive, from looking at the Studies table in the DB: | ||
+ | select * from Studies; | ||
+ | #Dump the PeakAmplitudes, using: | ||
+ | mysqldump --lock-all-tables --where 'Run_ID in (select R.Run_ID from CyberShake_Runs R where R.Study_ID=<study id to archive>)' CyberShake PeakAmplitudes > peak_amps.sql | ||
+ | #Dump Hazard_Datasets, using: | ||
+ | mysqldump --lock-all-tables --where 'Study_ID=<study id to archive>' CyberShake Hazard_Datasets > hazard_datasets.sql | ||
+ | #Dump Hazard_Curves, using: | ||
+ | mysqldump --lock-all-tables --where 'Hazard_Dataset_ID in (select D.Hazard_Dataset_ID from Hazard_Datasets D where D.Study_ID=<study id to archive>)' CyberShake Hazard_Curves > hazard_curves.sql | ||
+ | #Dump Hazard_Curve_Points, using: | ||
+ | mysqldump --lock-all-tables --where 'Hazard_Curve_ID in (select C.Hazard_Curve_ID from Hazard_Curves C, Hazard_Datasets D where D.Study_ID= | ||
+ | <study id to archive>)' CyberShake Hazard_Curve_Points > hazard_curve_points.sql | ||
+ | #Dump CyberShake_Runs, using: | ||
+ | mysqldump --lock-all-tables --where 'Study_ID=<study id to archive>' CyberShake CyberShake_Runs > runs.sql | ||
+ | #Dump all of the input tables -- they are small enough that we don't mind capturing data which wasn't directly used in this study. | ||
+ | mysqldump CyberShake AR_Hazard_Curve_Points AR_Hazard_Curves AR_Hazard_Datasets Atten_Rel_Metadata Atten_Rels CyberShake_Site_Regions CyberShake_Site_Ruptures CyberShake_Site_Types CyberShake_Sites ERF_IDs ERF_Metadata ERF_Probability_Models IM_Types Points Rupture_Variation_Probability_Modifier Rupture_Variation_Scenario_IDs Rupture_Variation_Scenario_Metadata Rupture_Variations Ruptures SGT_Variation_IDs SGT_Variation_Metadata Studies Time_Spans Velocity_Models > input_tables.sql | ||
+ | |||
+ | |||
+ | Next, convert the SQL dumps into SQLite format using mysql2sqlite: | ||
+ | |||
+ | #For each of the 6 dump files, run: | ||
+ | mysql2sqlite <SQL dump file> > <SQLite dump file> | ||
+ | Example: ./mysql2sqlite peak_amps.sql > peak_amps.sqlite | ||
+ | For large tables this may take an hour or two. | ||
+ | |||
+ | Create a SQLite database and import the tables. Use sqlite3 3.7.11 or later, or there will be an error reading the dump files. | ||
+ | #Create a database for this study: | ||
+ | sqlite3 <study name> | ||
+ | #For each dump file, run the following command: | ||
+ | .read <path/to/dump/file.sqlite> |
Revision as of 02:18, 6 October 2017
The following procedure should be used when we want to archive a study which is either in the production or data access database to disk, to free up room in the database.
First, dump the old database contents:
- Determine the Study ID you want to archive, from looking at the Studies table in the DB:
select * from Studies;
- Dump the PeakAmplitudes, using:
mysqldump --lock-all-tables --where 'Run_ID in (select R.Run_ID from CyberShake_Runs R where R.Study_ID=<study id to archive>)' CyberShake PeakAmplitudes > peak_amps.sql
- Dump Hazard_Datasets, using:
mysqldump --lock-all-tables --where 'Study_ID=<study id to archive>' CyberShake Hazard_Datasets > hazard_datasets.sql
- Dump Hazard_Curves, using:
mysqldump --lock-all-tables --where 'Hazard_Dataset_ID in (select D.Hazard_Dataset_ID from Hazard_Datasets D where D.Study_ID=<study id to archive>)' CyberShake Hazard_Curves > hazard_curves.sql
- Dump Hazard_Curve_Points, using:
mysqldump --lock-all-tables --where 'Hazard_Curve_ID in (select C.Hazard_Curve_ID from Hazard_Curves C, Hazard_Datasets D where D.Study_ID=
<study id to archive>)' CyberShake Hazard_Curve_Points > hazard_curve_points.sql
- Dump CyberShake_Runs, using:
mysqldump --lock-all-tables --where 'Study_ID=<study id to archive>' CyberShake CyberShake_Runs > runs.sql
- Dump all of the input tables -- they are small enough that we don't mind capturing data which wasn't directly used in this study.
mysqldump CyberShake AR_Hazard_Curve_Points AR_Hazard_Curves AR_Hazard_Datasets Atten_Rel_Metadata Atten_Rels CyberShake_Site_Regions CyberShake_Site_Ruptures CyberShake_Site_Types CyberShake_Sites ERF_IDs ERF_Metadata ERF_Probability_Models IM_Types Points Rupture_Variation_Probability_Modifier Rupture_Variation_Scenario_IDs Rupture_Variation_Scenario_Metadata Rupture_Variations Ruptures SGT_Variation_IDs SGT_Variation_Metadata Studies Time_Spans Velocity_Models > input_tables.sql
Next, convert the SQL dumps into SQLite format using mysql2sqlite:
- For each of the 6 dump files, run:
mysql2sqlite <SQL dump file> > <SQLite dump file> Example: ./mysql2sqlite peak_amps.sql > peak_amps.sqlite
For large tables this may take an hour or two.
Create a SQLite database and import the tables. Use sqlite3 3.7.11 or later, or there will be an error reading the dump files.
- Create a database for this study:
sqlite3 <study name>
- For each dump file, run the following command:
.read <path/to/dump/file.sqlite>