Product Backlog - Mei

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Mei-Hui Su's Project/Product Backlog

Project/Product Backlog

  1. UCVMC, generate etree for Garner Valley, CA for elnaz@caltech.edu
  2. UCVMC, config dumping tool
  3. CFM, study web page accessibility, https://www.w3.org/TR/wai-aria-practices, study ui write-up, https://www.smashingmagazine.com/06/designing-perfect-accordion-checklist/
  4. CFM, try out http://maps.conservation.ca.gov/cgs/fam/ and https://earthquake.usgs.gov/hazards/qfaults/
  5. CFM, survey 3d viewer tool for tsurf or geoJSON data
  6. CFM, update CFM db/tb schema after science group fix the excel page and resolve typo/conflicts/missing data
  7. UCVMC,learn the tools used in https://ds.iris.edu/ds/products/emc-desktoptools/. paraview for desktop
  8. UCVMC,refine sop & doc steps for generating ucvm.e
  9. UCVMC,tied up loose ends in UCVMC18.5 and test
  10. UCVMC,need to make UCVMC work with python3(Scott said bw is stern about it), mainly plotting and config/build scripts
  11. UCVMC,Discuss mesh plotting Scripts with Scott Cal.

DONE

  1. UCVMC, UCVM used for simulation SPECFEM3D seems to be causing segfaults (ctape@alaska.edu), https://scec.usc.edu/scecpedia/UCVM_elevation_vs_depth,_model_boundary
  2. UCVMC, add plot_elevation_profile.py and plot_elevation_cross_section.py, https://scec.usc.edu/scecpedia/UCVM_elevation_vs_depth,_model_boundary
  3. CFM, document CFM dashboard in github and transfer to SCEC space
  4. CFM, streamline the preprocessing of CFM database -- xlsx file to Postgres db
  5. UCVMC, generate plots for USGS CVM doc -- http://hypocenter.usc.edu/research/ucvmc/USGS-CVM-plot.tar.gz
  6. CFM, add analytic tracking to the dashboard -- Edric/google
  7. CFM, add latlon search option with direct location selection on the map area
  8. CFM, add highlighting of faults on the viewer part in addition to be from the table
  9. CFM, add group download(zip) of multiple faults geo data and meta data
  10. UCVMC, final set of plot/data for jplet@cpp.edu, 400+ 1d plots in http://hypocenter.usc.edu/research/ucvmc_result/pomona4.tar.gz, cross section plots in http://hypocenter.usc.edu/research/ucvmc_result/pomona3.tar.gz
  11. CFM, update cfm dashboard(add dip search, add 'key' trigger to keywordTxt, change latlon search to 4 inputs)
  12. CFM, add download function to CFM dashboard (on popup window)
  13. CFM, stash the CFM5.2 dataset at asperity's /var/www/html/CFM5_preferred/native, 500m, 1000m
  14. CFM, refine end-to-end setup of new CFM dashboard to server/client test environment
  15. CFM, setup initial CFM db host over at AWS, http://asperity.scec.org/CFM/web/cfm_view.html
  16. UCVMC, first set of plot/data for jplet@cpp.edu. https://scec.usc.edu/scecpedia/UCVMC_basin_depth_study,_poly_tech,_Pomona
  17. UCVMC, support jpolet@cpp.edu's group with cross_section and depth_profile processing (added metadata/data output to depth_profile.py) https://scec.usc.edu/scecpedia/UCVMC_how_to_plot_cross_section_and_depth_profile
  18. CFM, gather and define the functions needed for the leaflet CFM viewers and study leaflet api and start building up the viewer utilities
  19. UCVMC, update 1d grid reference data for UCVMC acceptance test
  20. CFM, add the linkup in js for the leaflet viewer and postgis' geoJSON geometry trace info
  21. CFM, add php/js to extract geoJSON for target fault object during query and track them to be sent to the viewer
  22. CFM, translate shapesfiles from release tarball into postgis db sql script and ingest into backend db
  23. CFM, explore and code a leaflet viewer with canned geoJSON data
  24. CFM, code php/java scripts/html page for queries with user input:query by region (with on the fly region list extracted from backend db via php), query by a range of strike value(with on the fly min/max strike range, extracted from the backend db via php), query by keyword(full text search from postgres db on object name, can be expanded in the future per request); query by latlon (within 0.0001 precision, a small roi box is created and used postgis to make overlap check)
  25. CFM, preprocess the excel from CFM5_release_2017, define db/tb schema and ingest the information into postgres db.
  26. UCVMC,generate the tiled v1000 data that Kevin needed for https://github.com/kevinmilner/cybershake-analysis/tree/master/study_18_8/hazard_maps#study-188-hazard-maps, they are left with https://scec.usc.edu/scecpedia/Bay_Area_Velocity_Model_Z2.5_data#Bay_Area_Velocity_Model
  27. CFM,study requirements for work on SCEC Community Fault Model,start with postgres db, postgis extension, php service, javascript, leaflet, tile service from open street map.
  28. UCVMC,define the json blob for material properties used in plotting scripts, define import and export to file format, rpretell@ucdavis.edu, https://scec.usc.edu/scecpedia/LA_Vertical_Profiles#Result
  29. UCVMC,look into updating Wills' map in UCVMC, https://scec.usc.edu/scecpedia/Wills_Map, ucvm.e
  30. UCVMC,work to make Rob Grave's mesh generating code to work for him (tweak Rob's directory and Scott's https://source.usc.edu/svn/cybershake/import/trunk/UCVM)
  31. UCVMC,doc how to process .bin file generated from plotting script or ucvm basin_query call, https://scec.usc.edu/scecpedia/UCVMC_How_to_process_bin_data
  32. UCVMC,translate pbs/hpc/ucvm2mesh to slurm calls
  33. (No work done)Generate large (100M+ point) AWP mesh using ucvmc and ucvmp and compare(Scott said ucvmp can not generate big mesh since it does not have mpi flavor to it)
  34. UCVMC,Bay Area velocity model's z2.5 plots for Kevin -- different tiling order of cca/cencal/cvms5 , https://scec.usc.edu/scecpedia/Bay_Area_Velocity_Model_Z2.5_data#Result
  35. UCVMC,updated cca06 crossing data for Kevin (fuzzy edge problem compare to UCVM python version, a bug found by Scott in CCA06 C version), nwo includes two sets, one without GTL and the other with GTL, https://scec.usc.edu/scecpedia/Final_CCA06_Crossings_Result
  36. Doc how La Habra mesh is made with ucvm2mesh_mpi_layer, https://scec.usc.edu/scecpedia/UCVMC_La_Habra_mesh_generation#ucvm2mesh_mpi_layer
  37. UCVMC,Generated various plots highlight CS17.3-H, https://scec.usc.edu/scecpedia/UCVMC_CS17.3-H_plots#Plots
  38. UCVMC,Registered new Central California Basin Model from Havard. CS17.3-H with ELY GTL
  39. UCVMC,built a useable UCVMC installation on Titan, /lustre/atlas/proj-shared/geo112/ucvm_18_5/
  40. UCVMC,made UCVMC statically linkable and the plugin models worked as in dynamically linked UCVMC
  41. UCVMC,reworked logic in ucvm2mesh-mpi to have a more 'feasible' compute node requirement for very large mesh like La Habra, ucvm2mesh_mpi_layer, remember to strip result directory when running at blue waters. lfs setstripe -c 4 /path/to/working/directory
  42. UCVMC,extract UCVMC cs173 info for Scott's gridpoints (off alittle but okayed by Scott)
  43. UCVMC,reworked basin_query tests in slurm on hpc
  44. UCVMC,created a pull request to official UCVM-C, fix up each models that is in github -- merged into official UCVMC's dev branch
  45. UCVMC,Ran tests tiling cencal+cca+cvms5+bbp1d, the 1d part gets surface gtl
  46. UCVMC,Tiled cencal+cca(with gtl)+cvms5(with gtl)+1d tested and verified
  47. UCVMC,GTL for CCA06- verified by generating identical plots to CyberShake_Study_18.5
  48. UCVMC,Fixed plugin/dynamic loading of modules, Scott's interleaving bug, fixes for cvmsi is also needed for the plugin module. There was the missed case for left-over points in chunking/processing code, fixed that. Also the code was not setup to take more than one dynamic library
  49. UCVMC,Setup to run my latest UCVMC on blue water - query works but plotting scripts do not work with BW's installed default pthread library(too old, conflicting with matplotlib's pyplot from Anaconda2)
  50. UCVM,Fixed segfaults flagged from a working ucvmc installation on local mac (fixed cs173_final(), cca_final()), (mac gdb installation hints: https://gist.github.com/gravitylow/fb595186ce6068537a6e9da6d8b5b96d)
  51. UCVMC,Ran basin_query_mpi on hpc with SLURM
  52. UCVMC,Doc projection fix on scecpedia, https://scec.usc.edu/scecpedia/Final_Projection_Review_Result
  53. UCVMC,Add the fixed config file into CCA's github, also edits from below(pending moving to scec space): https://github.com/meihuisu/CCA.git
  54. UCVMC,Copy the CCA06 data on scec-01/Intensity to hypocenter, change the dependency to hypocenter in the make-data script
  55. UCVMC,adding elygtl to CCA06
  56. UCVMC,new cs173 github location(pending moving to scec space):https://github.com/meihuisu/cs173.git
  57. UCVMC,Register Scott NorCal model into UCVM
 - CS173, compare CS173 plots from ScottC with my version
  58. UCVMC,Doc CCA06 Crossing review, https://scec.usc.edu/scecpedia/Final_CCA06_Crossings_Result
  59. UCVMC,Update basin_query_mpi to return list of crossing per grid point, also return one crossing output file for each algorithm.
  60. UCVMC,To check projection fix, trace processing from en-jui data files to configuration files
  61. UCVMC,Cross section plots showing 0-10km depth through CCA06, showing velocity inversions, starting at one end of region at 5km spacing to other end of region. **No need, posted inversion plot in scecpedia**

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