FloatCSEP

Testing of latest floatCSEP tutorials...

Interpretting yml files

The file paths are relative to the config.yml file attr_name: attr_value and colon: dash then attr_name: attr_value The valid module names are not clear the valid cmap is not clear No indication that the attri catalog: the value is boolean True

Models:
  -best_model:
       path: best_model.dat

Test Cases

case_a

The rules for specifying a test module name seem to be give the

      func: poisson_evaluations.number_test
      plot_func: plot_poisson_consistency_test

case_b
case_c
case_d

introduces wheel as a model

case_e

The impact of the plot command not obvious. Seems to replace cmap: magma with colormap:magma, which may mean the same thing.

case_f

Error when replacing the catalog: geonet_catalog statement as described in the docs....

Traceback (most recent call last):
  File "/Users/maechlin/anaconda3/envs/csep_env/bin/floatcsep", line 8, in <module>
    sys.exit(floatcsep())
             ^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/commands/main.py", line 224, in floatcsep
    func(**vars(args))
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/commands/main.py", line 79, in run
    exp = Experiment.from_yml(config_yml=config, **kwargs)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/experiment.py", line 690, in from_yml
    return cls(**_dict, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/experiment.py", line 160, in __init__
    self.catalog_repo.set_main_catalog(catalog, self.time_config, self.region_config)
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/infrastructure/repositories.py", line 368, in set_main_catalog
    self.catalog = catalog
    ^^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/infrastructure/repositories.py", line 429, in catalog
    self._catalog = parse_csep_func(cat)
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/utils/helpers.py", line 85, in parse_csep_func
    raise AttributeError(
AttributeError: Evaluation/Plot/Region function query_geonet has not yet been implemented in floatcsep or pycsep
(csep_env) maechlin@Philip-James-MacBook case_f %

case_f

How does floatCSEP determine the number of tasks e.g. below

2024-10-21 15:51:40 INFO - Setting up experiment's tasks
2024-10-21 15:51:40 INFO - Running 16 tasks

case_g

replaced models.yml build: venv with build: docker and it still runs... shutdown docker on laptop, and run again, and still runs..."Dockermanager"

case_h

Put dependencies on model developers to ensure they provide an environment.yml file in the root of the gitrepo. This is used to build the

2024-10-21 16:33:21 INFO - [Negbinom_Mock]: Total of 806 events M>4.0 in 100 synthetic catalogs
2024-10-21 16:33:23 INFO - Calculation completed
2024-10-21 16:33:23 INFO - Plotting forecasts
Traceback (most recent call last):
  File "/Users/maechlin/anaconda3/envs/csep_env/bin/floatcsep", line 8, in <module>
    sys.exit(floatcsep())
             ^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/commands/main.py", line 224, in floatcsep
    func(**vars(args))
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/commands/main.py", line 85, in run
    plot_forecasts(experiment=exp)
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/postprocess/plot_handler.py", line 91, in plot_forecasts
    ax = model.get_forecast(window, experiment.region).plot(
         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/csep/core/forecasts.py", line 716, in plot
    self.get_expected_rates(verbose=verbose)
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/csep/core/forecasts.py", line 696, in get_expected_rates
    gridded_counts = cat.spatial_magnitude_counts()
                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/csep/core/catalogs.py", line 771, in spatial_magnitude_counts
    raise ValueError("at least one magnitude value outside of the valid region.")
ValueError: at least one magnitude value outside of the valid region.

Read the docs links for floatCSEP

floatCSEP Tutorial

Mac Test Hardware

Macbook pro Quad-core Intel i5
Sonoma 14.7

Conda environment on Mac

/Users/maechlin/dev
$ conda info
     active environment : base
    active env location : /Users/maechlin/anaconda3
            shell level : 1
       user config file : /Users/maechlin/.condarc
 populated config files : /Users/maechlin/.condarc
          conda version : 23.5.0
    conda-build version : 3.18.11
         python version : 3.8.15.final.0

$ conda list

pycsep 0.6.2 pyhd8ed1ab_0 conda-forge

Update to conda environment command:

conda create --name csep_env
conda activate csep_env
conda install python=3.11
clone https://github.com/cseptesting/floatcsep
cd floatcsep
pip install .
Error on build of obspy -

      copying obspy/signal/tests/data/tiny_quality_file.mseed -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data
      copying obspy/signal/tests/data/unknown.resp -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data
      creating build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data/segfaulting_RESPs
      copying obspy/signal/tests/data/segfaulting_RESPs/RESP.IE.LLRI..EHZ -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data/segfaulting_RESPs
      running build_ext
      building 'gcf' extension
      creating build/temp.macosx-10.13-x86_64-cpython-311/obspy/io/gcf/src
      clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/maechlin/anaconda3/envs/csep_env/include -fPIC -O2 -isystem /Users/maechlin/anaconda3/envs/csep_env/include -I/Users/maechlin/anaconda3/envs/csep_env/include/python3.11 -c obspy/io/gcf/src/gcf_io.c -o build/temp.macosx-10.13-x86_64-cpython-311/obspy/io/gcf/src/gcf_io.o
      xcode-select: note: No developer tools were found, requesting install.
      If developer tools are located at a non-default location on disk, use `sudo xcode-select --switch path/to/Xcode.app` to specify the Xcode that you wish to use for command line developer tools, and cancel the installation dialog.
      See `man xcode-select` for more details.
      error: command '/usr/bin/clang' failed with exit code 1
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for obspy
Successfully built floatcsep pycsep
Failed to build obspy
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (obspy)

Try install of clang on Mac

xcode-select --install

Brings up a install window on Mac desktop with 5 minute install

Exit environment
New terminal window
conda activity csep_env
cd dev/floatcsep
pip install .

Complete build no errors

Related Entries

CSEP
pyCSEP

FloatCSEP

Contents

Interpretting yml files

Test Cases

Read the docs links for floatCSEP

Mac Test Hardware

Conda environment on Mac

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