UCVM etree for Garner Valley
Garner Valley
Generate etree with different parameters for Garner Valley
with SVM
For mpi_Elnaz2_garnervalley_cvms5_svm_5hz_10pts_200ms,
config file etree(size:12G, compressed 3.5G)
For mpi_Elnaz2_garnervalley_cvms5_gtl_5hz_10pts_200ms,
config file etree(size:9.5G, compressed 4.1G)
For mpi_Elnaz2_garnervalley_cvms5_ely_5hz_10pts_200ms,
config file etree(size:9.5G, compressed 4.1G)
For mpi_Elnaz2_garnervalley_cvms5_nogtl_5hz_10pts_200ms,
config file etree(size:3.2G, compressed 1.5G)
For test3_garnervalley_cvms5_svm_0.5hz_10.0pts_1000ms,
config file etree(size:3.6M, compressed 1.8M)
For mpi_test3_garnervalley_cvms5_svm_0.5hz_10.0pts_1000ms,
config file etree(size:3.6M, compressed 1.8M)
For mpi_test3_garnervalley_cvms5_nogtl_0.5hz_10.0pts_1000ms,
config file etree(size:3.6M, compressed 1.8M)
Result
etree_input.txt used to setup the etree generation
## ## etree_input.txt # #label,MODEL,GTL,MAX_FREQ, PPWL, VS_MIN test1,cvmh,gtl,0.5,10.0,1000 test1,cvmh,nogtl,0.5,10.0,1000 test2,cvmh,gtl,5,10.0,1000 test2,cvmh,nogtl,5,10.0,1000 test3,cvms5,gtl,0.5,10.0,1000 test3,cvms5,nogtl,0.5,10.0,1000 test4,cvms5,gtl,5,10.0,1000 test4,cvms5,nogtl,5,10.0,1000 test5,cvmsi,gtl,0.5,10.0,1000 test6,cvmsi,gtl,5,10.0,1000
Elnaz1,cvmh,gtl,5,10,200 Elnaz1,cvmh,nogtl,5,10,200 Elnaz2,cvm5,gtl,5,10,200 Elnaz2,cvm5,nogtl,5,10,200
For test1_garnervalley_cvmh_nogtl_0.5hz_10.0pts_1000ms,
config file etree(size:2.5M, compressed 372K)
For test2_garnervalley_cvmh_nogtl_5hz_10.0pts_1000ms,
config file etree(size:3.8G, compressed 362M)
For test1_garnervalley_cvmh_gtl_0.5hz_10.0pts_1000ms,
config file etree(size:5.4M, compressed 822K)
For test2_garnervalley_cvmh_gtl_5hz_10.0pts_1000ms,
config file etree(size:4.6G, compressed 456M)
For test3_garnervalley_cvms5_nogtl_0.5hz_10.0pts_1000ms,
config file etree(size:5.5M, compressed 2.3M)
For test4_garnervalley_cvms5_nogtl_5hz_10.0pts_1000ms,
config file etree(size:4.7G, compressed 2.2G) ecompact etree(size:3.1G, compressed 1.5G) ecoalesce etree(size:3.1G, compressed 1.5G)
For test3_garnervalley_cvms5_gtl_0.5hz_10.0pts_1000ms,
config file etree(size:6.1M, compressed 2.6M)
For test4_garnervalley_cvms5_gtl_5hz_10.0pts_1000ms,
config file etree(size:4.9G, compressed 2.3G)
For test5_garnervalley_cvmsi_gtl_0.5hz_10.0pts_1000ms,
config file etree(size:2.7M, compressed 886K)
For test6_garnervalley_cvmsi_gtl_5hz_10.0pts_1000ms,
config file etree(size:3.4M, compressed 1.5M)
For Elnaz2_garnervalley_cvms5_gtl_5hz_10pts_200ms,
config file etree(size:31G, compressed 12G) ecompact-etree(size:20G, compressed 7.3G)
For Elnaz2_garnervalley_cvms5_nogtl_5hz_10pts_200ms,
config file etree(size:4.9G, compressed 2.3G)
For Elnaz1_garnervalley_cvmh_gtl_5hz_10pts_200ms,
config file etree(size:9.2G, compressed 937M)
For Elnaz1_garnervalley_cvmh_nogtl_5hz_10pts_200ms,
config file etree(size:24G, compressed 2.0G)
Validation
Using UCVM, plot vertical profiles around
-s 34.15,-117.165
Using UCVM, plot slices and cross sections around ROI,
plotting Vs with these 2 points:
lat1 = 33.4022 lon1 = -116.8593 lat2 = 33.7958 lon2 = -116.3984
Utility script
A sh script used to generate the config file and running ucvm2etree
#!/bin/sh
#Request for etree
#From: Esmaeilzadeh Seylabi, Elnaz <elnaz@caltech.edu>
#CC: Ricardo Taborda Rios <rtaborda@eafit.edu.co>, Asimaki,
# Domniki (Domniki) <domniki@caltech.edu>,
# Doriam Leidin Restrepo Sánchez <drestre6@eafit.edu.co>
etree_go () {
${UCVM_INSTALL}/bin/ucvm2etree -f ${ETREE_CONFIG}
}
## generate the etree.conf
etree_foo() {
configfile=./${ETREE_CONFIG}
/bin/cat >$configfile << END
#
# ${DATE}
#
# ${ETREE_CONFIG}
#
proj=geo-bilinear
lon_0=-116.8593
lat_0=33.6403
lon_1=-116.6457
lat_1=33.7958
lon_2=-116.3984
lat_2=33.5572
lon_3=-116.6119
lat_3=33.4022
# Domain dimensions (meters):
x-size=26250.0000
y-size=35000.0000
z-size=4375.0000
# Max freq, points per wavelength, Vs min
max_freq=${MAX_FREQ}
ppwl=${PPWL}
vs_min=${VS_MIN}
# Blocks partition parameters:
nx=6
ny=8
# Max allowed size of octants in meters
max_octsize=10000.0
# Etree parameters and info
title=GarnerValley_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms
author=Mei_Hui_Su4Elnza
date=02/27/2019
outputfile=./${LABEL}_garnervalley_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms.e
format=etree
# UCVM parameters
ucvmstr=${MODEL}
ucvm_interp_zrange=0.0,350.0
ucvmconf=${UCVM_INSTALL}/conf/ucvm.conf
# Scratch
scratch=./scratch
#
# Buffering parameters
#
# Etree buffer size in MB
buf_etree_cache=128
# Max octants to buffer for flat file during extraction
buf_extract_mem_max_oct=4194304
# Max octants to save in flat file before reporting full during extraction
buf_extract_ffile_max_oct=16000000
# Max octants to read from input flat file during sorting
buf_sort_ffile_max_oct=20000000
# Minimum number of octants between reports during merging
buf_merge_report_min_oct=10000000
# MPI send/recv octant buffer size during merging
buf_merge_sendrecv_buf_oct=4096
# Etree read/write octant buffer size during merging
buf_merge_io_buf_oct=4194304
END
}
##
## etree_input.txt
#
#label,MODEL,GTL,MAX_FREQ, PPWL, VS_MIN
#test1,cvmh,gtl,0.5,10.0,1000
#test1,cvmh,nogtl,0.5,10.0,1000
#test2,cvmh,gtl,5,10.0,1000
#test2,cvmh,nogtl,5,10.0,1000
#Elnaz1,cvmh,gtl,5,10,200
#Elnaz1,cvmh,nogtl,5,10,200
#Elnaz2,cvmh,gtl,5,10,150
#Elnaz2,cvmh,nogtl,5,10,150
UCVM_INSTALL="/home/scec-00/mei/ucvmc_18_5/install"
DATE=`date`
input="etree_input.txt"
while IFS= read -r file; do
arrData=(${file//,/ })
[[ $arrData =~ ^#.* ]] && continue
LABEL=${arrData[0]}
MODEL=${arrData[1]}
GTL=${arrData[2]}
MAX_FREQ=${arrData[3]}
PPWL=${arrData[4]}
VS_MIN=${arrData[5]}
ETREE_CONFIG=${LABEL}_garnervalley_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms.conf
etree_foo
etree_go
done < "$input"
