View source for UCVM etree for Garner Valley


== Garner Valley ==

Generate etree with different parameters for Garner Valley

{|
| [[File:GarnerValley.png|thumb|300px|ROI: Garner Valley]]
|}

== with SVM ==

For test3_garnervalley_cvms5_svmgtl_0.5hz_10.0pts_1000ms, 

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test3_garnervalley_cvms5_svmgtl_0.5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test3_garnervalley_cvms5_svmgtl_0.5hz_10.0pts_1000ms.e.tar.gz etree](size:5.5M, compressed 2.2M)


For mpi_test3_garnervalley_cvms5_nogtl_0.5hz_10.0pts_1000ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/mpi_test3_garnervalley_cvms5_nogtl_0.5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/mpi_test3_garnervalley_cvms5_nogtl_0.5hz_10.0pts_1000ms.e.tar.gz etree](size:3.6M, compressed 1.8M)

For mpi_Elnaz2_garnervalley_cvms5_svm_5hz_10pts_200ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/mpi_Elnaz2_garnervalley_cvms5_svm_5hz_10pts_200ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/mpi_Elnaz2_garnervalley_cvms5_svm_5hz_10pts_200ms.e.tar.gz etree](size:XXXM, compressed XXXM)

== Result ==

etree_input.txt used to setup the etree generation

<pre>
##
## etree_input.txt
#
#label,MODEL,GTL,MAX_FREQ, PPWL, VS_MIN
test1,cvmh,gtl,0.5,10.0,1000
test1,cvmh,nogtl,0.5,10.0,1000
test2,cvmh,gtl,5,10.0,1000
test2,cvmh,nogtl,5,10.0,1000
test3,cvms5,gtl,0.5,10.0,1000
test3,cvms5,nogtl,0.5,10.0,1000
test4,cvms5,gtl,5,10.0,1000
test4,cvms5,nogtl,5,10.0,1000
test5,cvmsi,gtl,0.5,10.0,1000
test6,cvmsi,gtl,5,10.0,1000
</pre>

<pre>
Elnaz1,cvmh,gtl,5,10,200
Elnaz1,cvmh,nogtl,5,10,200
Elnaz2,cvm5,gtl,5,10,200
Elnaz2,cvm5,nogtl,5,10,200
</pre>


For test1_garnervalley_cvmh_nogtl_0.5hz_10.0pts_1000ms, 

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test1_garnervalley_cvmh_nogtl_0.5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test1_garnervalley_cvmh_nogtl_0.5hz_10.0pts_1000ms.e.tar.gz etree](size:2.5M, compressed 372K)

For test2_garnervalley_cvmh_nogtl_5hz_10.0pts_1000ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test2_garnervalley_cvmh_nogtl_5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test2_garnervalley_cvmh_nogtl_5hz_10.0pts_1000ms.e.tar.gz etree](size:3.8G, compressed 362M)

For test1_garnervalley_cvmh_gtl_0.5hz_10.0pts_1000ms, 

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test1_garnervalley_cvmh_gtl_0.5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test1_garnervalley_cvmh_gtl_0.5hz_10.0pts_1000ms.e.tar.gz etree](size:5.4M, compressed 822K)

For test2_garnervalley_cvmh_gtl_5hz_10.0pts_1000ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test2_garnervalley_cvmh_gtl_5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test2_garnervalley_cvmh_gtl_5hz_10.0pts_1000ms.e.tar.gz etree](size:4.6G, compressed 456M)

For test3_garnervalley_cvms5_nogtl_0.5hz_10.0pts_1000ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test3_garnervalley_cvms5_nogtl_0.5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test3_garnervalley_cvms5_nogtl_0.5hz_10.0pts_1000ms.e.tar.gz etree](size:5.5M, compressed 2.3M)

For test4_garnervalley_cvms5_nogtl_5hz_10.0pts_1000ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test4_garnervalley_cvms5_nogtl_5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test4_garnervalley_cvms5_nogtl_5hz_10.0pts_1000ms.e.tar.gz etree](size:4.7G, compressed 2.2G)  
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test4_garnervalley_cvms5_nogtl_5hz_10.0pts_1000ms_ecompact.e.tar.gz ecompact etree](size:3.1G, compressed 1.5G)  
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test4_garnervalley_cvms5_nogtl_5hz_10.0pts_1000ms_ecoalesce.e.tar.gz ecoalesce etree](size:3.1G, compressed 1.5G)

For test3_garnervalley_cvms5_gtl_0.5hz_10.0pts_1000ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test3_garnervalley_cvms5_gtl_0.5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test3_garnervalley_cvms5_gtl_0.5hz_10.0pts_1000ms.e.tar.gz etree](size:6.1M, compressed 2.6M)

For test4_garnervalley_cvms5_gtl_5hz_10.0pts_1000ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test4_garnervalley_cvms5_gtl_5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test4_garnervalley_cvms5_gtl_5hz_10.0pts_1000ms.e.tar.gz etree](size:4.9G, compressed 2.3G)

For test5_garnervalley_cvmsi_gtl_0.5hz_10.0pts_1000ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test5_garnervalley_cvmsi_gtl_0.5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test5_garnervalley_cvmsi_gtl_0.5hz_10.0pts_1000ms.e.tar.gz etree](size:2.7M, compressed 886K)


For test6_garnervalley_cvmsi_gtl_5hz_10.0pts_1000ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test6_garnervalley_cvmsi_gtl_5hz_10.0pts_1000ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/test6_garnervalley_cvmsi_gtl_5hz_10.0pts_1000ms.e.tar.gz etree](size:3.4M, compressed 1.5M)


For Elnaz2_garnervalley_cvms5_gtl_5hz_10pts_200ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/Elnaz2_garnervalley_cvms5_gtl_5hz_10pts_200ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/Elnaz2_garnervalley_cvms5_gtl_5hz_10pts_200ms.e.tar.gz etree](size:31G, compressed 12G)
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/ecompact_Elnaz2_garnervalley_cvms5_gtl_5hz_10pts_200ms.e.tar.gz ecompact-etree](size:20G, compressed 7.3G)

For Elnaz2_garnervalley_cvms5_nogtl_5hz_10pts_200ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/Elnaz2_garnervalley_cvms5_nogtl_5hz_10pts_200ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/Elnaz2_garnervalley_cvms5_nogtl_5hz_10pts_200ms.e.tar.gz etree](size:4.9G, compressed 2.3G)

For Elnaz1_garnervalley_cvmh_gtl_5hz_10pts_200ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/Elnaz1_garnervalley_cvmh_gtl_5hz_10pts_200ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/Elnaz1_garnervalley_cvmh_gtl_5hz_10pts_200ms.e.tar.gz etree](size:9.2G, compressed 937M)

For Elnaz1_garnervalley_cvmh_nogtl_5hz_10pts_200ms,

[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/Elnaz1_garnervalley_cvmh_nogtl_5hz_10pts_200ms.conf config file]
[http://hypocenter.usc.edu/research/ucvmc_result/garnervalley/Elnaz1_garnervalley_cvmh_nogtl_5hz_10pts_200ms.e.tar.gz etree](size:24G, compressed 2.0G)

== Validation ==

Using UCVM, plot horizontal slices and cross sections around ROI,

plotting Vs with these 2 points:

  lat1  =  33.4022
  lon1  =  -116.8593
  lat2  =  33.7958
  lon2  =  -116.3984


{|
| [[File:cvmh_nogtl_garnervalley_depth_cross.png|thumb|300px|cvmh, nogtl]]
| [[File:cvmh_nogtl_garnervalley_elevation_cross.png|thumb|300px|cvmh, nogtl]]
| [[File:cvmh_nogtl_garnervalley_horizontal.png|thumb|300px|cvmh, nogtl]]
|}

{|
| [[File:cvms5_nogtl_garnervalley_depth_cross.png|thumb|300px|cvms5, nogtl]]
| [[File:cvms5_nogtl_garnervalley_elevation_cross.png|thumb|300px|cvms5, nogtl]]
| [[File:cvms5_nogtl_garnervalley_horizontal.png|thumb|300px|cvms5, nogtl]]
|}

{|
| [[File:cvmh_gtl_garnervalley_depth_cross.png|thumb|300px|cvmh, gtl]]
| [[File:cvmh_gtl_garnervalley_elevation_cross.png|thumb|300px|cvmh, gtl]]
| [[File:cvmh_gtl_garnervalley_horizontal.png|thumb|300px|cvmh, gtl]]
|}

{|
| [[File:cvms5_gtl_garnervalley_depth_cross.png|thumb|300px|cvms5, gtl]]
| [[File:cvms5_gtl_garnervalley_elevation_cross.png|thumb|300px|cvms5, gtl]]
| [[File:cvms5_gtl_garnervalley_horizontal.png|thumb|300px|cvms5, gtl]]
|}

{|
| [[File:cvmsi_x_garnervalley_depth_cross.png|thumb|300px|cvmsi, gtl]]
| [[File:cvmsi_x_garnervalley_elevation_cross.png|thumb|300px|cvmsi, gtl]]
| [[File:cvmsi_x_garnervalley_horizontal.png|thumb|300px|cvmsi, gtl]]
|}

== Utility script ==

A sh script used to generate the config file and running ucvm2etree

<pre>
#!/bin/sh  

#Request for etree
#From:   Esmaeilzadeh Seylabi, Elnaz <elnaz@caltech.edu>
#CC:     Ricardo Taborda Rios <rtaborda@eafit.edu.co>, Asimaki,
#        Domniki (Domniki) <domniki@caltech.edu>,
#        Doriam Leidin Restrepo Sánchez <drestre6@eafit.edu.co>


etree_go () {
  ${UCVM_INSTALL}/bin/ucvm2etree -f ${ETREE_CONFIG}
}

## generate the etree.conf
etree_foo() {

configfile=./${ETREE_CONFIG}

/bin/cat >$configfile << END 

#
# ${DATE}
#
# ${ETREE_CONFIG}
#

proj=geo-bilinear 
lon_0=-116.8593
lat_0=33.6403

lon_1=-116.6457
lat_1=33.7958

lon_2=-116.3984
lat_2=33.5572

lon_3=-116.6119
lat_3=33.4022

# Domain dimensions (meters):
x-size=26250.0000
y-size=35000.0000
z-size=4375.0000

# Max freq, points per wavelength, Vs min
max_freq=${MAX_FREQ}
ppwl=${PPWL}
vs_min=${VS_MIN}

# Blocks partition parameters:
nx=6
ny=8
 
# Max allowed size of octants in meters
max_octsize=10000.0

# Etree parameters and info
title=GarnerValley_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms
author=Mei_Hui_Su4Elnza
date=02/27/2019
outputfile=./${LABEL}_garnervalley_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms.e
format=etree 

# UCVM parameters
ucvmstr=${MODEL}
ucvm_interp_zrange=0.0,350.0 
ucvmconf=${UCVM_INSTALL}/conf/ucvm.conf

# Scratch
scratch=./scratch

#
# Buffering parameters
#
# Etree buffer size in MB
buf_etree_cache=128
# Max octants to buffer for flat file during extraction
buf_extract_mem_max_oct=4194304
# Max octants to save in flat file before reporting full during extraction
buf_extract_ffile_max_oct=16000000
# Max octants to read from input flat file during sorting
buf_sort_ffile_max_oct=20000000
# Minimum number of octants between reports during merging

buf_merge_report_min_oct=10000000
# MPI send/recv octant buffer size during merging
buf_merge_sendrecv_buf_oct=4096
# Etree read/write octant buffer size during merging
buf_merge_io_buf_oct=4194304


END
}

##
## etree_input.txt
#
#label,MODEL,GTL,MAX_FREQ, PPWL, VS_MIN
#test1,cvmh,gtl,0.5,10.0,1000
#test1,cvmh,nogtl,0.5,10.0,1000
#test2,cvmh,gtl,5,10.0,1000
#test2,cvmh,nogtl,5,10.0,1000
#Elnaz1,cvmh,gtl,5,10,200
#Elnaz1,cvmh,nogtl,5,10,200
#Elnaz2,cvmh,gtl,5,10,150
#Elnaz2,cvmh,nogtl,5,10,150

UCVM_INSTALL="/home/scec-00/mei/ucvmc_18_5/install"
DATE=`date`

input="etree_input.txt"
while IFS= read -r file; do
  arrData=(${file//,/ })
  [[ $arrData =~ ^#.* ]] && continue
  LABEL=${arrData[0]}
  MODEL=${arrData[1]}
  GTL=${arrData[2]}
  MAX_FREQ=${arrData[3]}
  PPWL=${arrData[4]}
  VS_MIN=${arrData[5]}
  ETREE_CONFIG=${LABEL}_garnervalley_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms.conf
  
  etree_foo
  etree_go

done < "$input"
</pre>

== Related Links ==
*[[UCVM]]