Difference between revisions of "FloatCSEP"
Line 31: | Line 31: | ||
The impact of the plot command not obvious. Seems to replace cmap: magma with colormap:magma, which may mean the same thing. | The impact of the plot command not obvious. Seems to replace cmap: magma with colormap:magma, which may mean the same thing. | ||
* case_f | * case_f | ||
+ | Error when replacing the catalog: geonet_catalog statement as described in the docs.... | ||
<pre> | <pre> | ||
Traceback (most recent call last): | Traceback (most recent call last): | ||
Line 57: | Line 58: | ||
(csep_env) maechlin@Philip-James-MacBook case_f % | (csep_env) maechlin@Philip-James-MacBook case_f % | ||
+ | </pre> | ||
+ | * case_f | ||
+ | How does floatCSEP determine the number of tasks e.g. below | ||
+ | <pre> | ||
+ | 2024-10-21 15:51:40 INFO - Setting up experiment's tasks | ||
+ | 2024-10-21 15:51:40 INFO - Running 16 tasks | ||
</pre> | </pre> | ||
Revision as of 22:53, 21 October 2024
Testing of latest floatCSEP tutorials...
Contents
Interpretting yml files
syntax may not be consistent, with mix of colon: attr_name: attr_value and colon: dash then attr_name: attr_value The file paths are relative to the config.yml file The valid module names are not clear the valid cmap is not clear No indication that the attri catalog: the value is boolean True
Models: -best_model: path: best_model.dat
Test Cases
- case_a
The rules for specifying a test module name seem to be give the
func: poisson_evaluations.number_test plot_func: plot_poisson_consistency_test
- case_b
- case_c
- case_d
introduces wheel as a model
- case_e
The impact of the plot command not obvious. Seems to replace cmap: magma with colormap:magma, which may mean the same thing.
- case_f
Error when replacing the catalog: geonet_catalog statement as described in the docs....
Traceback (most recent call last): File "/Users/maechlin/anaconda3/envs/csep_env/bin/floatcsep", line 8, in <module> sys.exit(floatcsep()) ^^^^^^^^^^^ File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/commands/main.py", line 224, in floatcsep func(**vars(args)) File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/commands/main.py", line 79, in run exp = Experiment.from_yml(config_yml=config, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/experiment.py", line 690, in from_yml return cls(**_dict, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^ File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/experiment.py", line 160, in __init__ self.catalog_repo.set_main_catalog(catalog, self.time_config, self.region_config) File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/infrastructure/repositories.py", line 368, in set_main_catalog self.catalog = catalog ^^^^^^^^^^^^ File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/infrastructure/repositories.py", line 429, in catalog self._catalog = parse_csep_func(cat) ^^^^^^^^^^^^^^^^^^^^ File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/utils/helpers.py", line 85, in parse_csep_func raise AttributeError( AttributeError: Evaluation/Plot/Region function query_geonet has not yet been implemented in floatcsep or pycsep (csep_env) maechlin@Philip-James-MacBook case_f %
- case_f
How does floatCSEP determine the number of tasks e.g. below
2024-10-21 15:51:40 INFO - Setting up experiment's tasks 2024-10-21 15:51:40 INFO - Running 16 tasks
read the docs links for floatCSEP
Mac Hardward
- Macbook pro Quad-core Intel i5
- Sonoma 14.7
Conda environment on Mac
/Users/maechlin/dev $ conda info active environment : base active env location : /Users/maechlin/anaconda3 shell level : 1 user config file : /Users/maechlin/.condarc populated config files : /Users/maechlin/.condarc conda version : 23.5.0 conda-build version : 3.18.11 python version : 3.8.15.final.0
$ conda list
- pycsep 0.6.2 pyhd8ed1ab_0 conda-forge
Update to conda environment command:
- conda create --name csep_env
- conda activate csep_env
- conda install python=3.11
- clone https://github.com/cseptesting/floatcsep
- cd floatcsep
- pip install .
- Error on build of obspy -
copying obspy/signal/tests/data/tiny_quality_file.mseed -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data copying obspy/signal/tests/data/unknown.resp -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data creating build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data/segfaulting_RESPs copying obspy/signal/tests/data/segfaulting_RESPs/RESP.IE.LLRI..EHZ -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data/segfaulting_RESPs running build_ext building 'gcf' extension creating build/temp.macosx-10.13-x86_64-cpython-311/obspy/io/gcf/src clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/maechlin/anaconda3/envs/csep_env/include -fPIC -O2 -isystem /Users/maechlin/anaconda3/envs/csep_env/include -I/Users/maechlin/anaconda3/envs/csep_env/include/python3.11 -c obspy/io/gcf/src/gcf_io.c -o build/temp.macosx-10.13-x86_64-cpython-311/obspy/io/gcf/src/gcf_io.o xcode-select: note: No developer tools were found, requesting install. If developer tools are located at a non-default location on disk, use `sudo xcode-select --switch path/to/Xcode.app` to specify the Xcode that you wish to use for command line developer tools, and cancel the installation dialog. See `man xcode-select` for more details. error: command '/usr/bin/clang' failed with exit code 1 [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for obspy Successfully built floatcsep pycsep Failed to build obspy ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (obspy)
Try install of clang on Mac
- xcode-select --install
Brings up a install window on Mac desktop with 5 minute install
- Exit environment
- New terminal window
- conda activity csep_env
- cd dev/floatcsep
- pip install .
Complete build no errors