FloatCSEP

Testing of latest floatCSEP tutorials...

Interpretting yml files

syntax may not be consistent, with mix of colon: attr_name: attr_value and colon: dash then attr_name: attr_value The file paths are relative to the config.yml file The valid module names are not clear the valid cmap is not clear No indication that the attri catalog: the value is boolean True

Models:
  -best_model:
       path: best_model.dat

Test Cases

• case_a

The rules for specifying a test module name seem to be give the

      func: poisson_evaluations.number_test
      plot_func: plot_poisson_consistency_test

• case_b
• case_c
• case_d

introduces wheel as a model

• case_e

The impact of the plot command not obvious. Seems to replace cmap: magma with colormap:magma, which may mean the same thing.

• case_f

Error when replacing the catalog: geonet_catalog statement as described in the docs....

Traceback (most recent call last):
  File "/Users/maechlin/anaconda3/envs/csep_env/bin/floatcsep", line 8, in <module>
    sys.exit(floatcsep())
             ^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/commands/main.py", line 224, in floatcsep
    func(**vars(args))
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/commands/main.py", line 79, in run
    exp = Experiment.from_yml(config_yml=config, **kwargs)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/experiment.py", line 690, in from_yml
    return cls(**_dict, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/experiment.py", line 160, in __init__
    self.catalog_repo.set_main_catalog(catalog, self.time_config, self.region_config)
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/infrastructure/repositories.py", line 368, in set_main_catalog
    self.catalog = catalog
    ^^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/infrastructure/repositories.py", line 429, in catalog
    self._catalog = parse_csep_func(cat)
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/utils/helpers.py", line 85, in parse_csep_func
    raise AttributeError(
AttributeError: Evaluation/Plot/Region function query_geonet has not yet been implemented in floatcsep or pycsep
(csep_env) maechlin@Philip-James-MacBook case_f % 

• case_f

How does floatCSEP determine the number of tasks e.g. below

2024-10-21 15:51:40 INFO - Setting up experiment's tasks
2024-10-21 15:51:40 INFO - Running 16 tasks

• case_g

replaced models.yml build: venv with build: docker and it still runs... shutdown docker on laptop, and run again, and still runs..."Dockermanager"

• case_h

Put dependencies on model developers to ensure they provide an environment.yml file in the root of the gitrepo. This is used to build the

read the docs links for floatCSEP

• floatCSEP Tutorial

Mac Hardward

• Macbook pro Quad-core Intel i5
• Sonoma 14.7

Conda environment on Mac

/Users/maechlin/dev
$ conda info
     active environment : base
    active env location : /Users/maechlin/anaconda3
            shell level : 1
       user config file : /Users/maechlin/.condarc
 populated config files : /Users/maechlin/.condarc
          conda version : 23.5.0
    conda-build version : 3.18.11
         python version : 3.8.15.final.0

$ conda list

• pycsep 0.6.2 pyhd8ed1ab_0 conda-forge

Update to conda environment command:

• conda create --name csep_env
• conda activate csep_env
• conda install python=3.11
• clone https://github.com/cseptesting/floatcsep
• cd floatcsep
• pip install .
• Error on build of obspy -

      copying obspy/signal/tests/data/tiny_quality_file.mseed -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data
      copying obspy/signal/tests/data/unknown.resp -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data
      creating build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data/segfaulting_RESPs
      copying obspy/signal/tests/data/segfaulting_RESPs/RESP.IE.LLRI..EHZ -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data/segfaulting_RESPs
      running build_ext
      building 'gcf' extension
      creating build/temp.macosx-10.13-x86_64-cpython-311/obspy/io/gcf/src
      clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/maechlin/anaconda3/envs/csep_env/include -fPIC -O2 -isystem /Users/maechlin/anaconda3/envs/csep_env/include -I/Users/maechlin/anaconda3/envs/csep_env/include/python3.11 -c obspy/io/gcf/src/gcf_io.c -o build/temp.macosx-10.13-x86_64-cpython-311/obspy/io/gcf/src/gcf_io.o
      xcode-select: note: No developer tools were found, requesting install.
      If developer tools are located at a non-default location on disk, use `sudo xcode-select --switch path/to/Xcode.app` to specify the Xcode that you wish to use for command line developer tools, and cancel the installation dialog.
      See `man xcode-select` for more details.
      error: command '/usr/bin/clang' failed with exit code 1
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for obspy
Successfully built floatcsep pycsep
Failed to build obspy
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (obspy)

Try install of clang on Mac

• xcode-select --install

Brings up a install window on Mac desktop with 5 minute install

• Exit environment
• New terminal window
• conda activity csep_env
• cd dev/floatcsep
• pip install .

Complete build no errors

Related Entries

• CSEP
• pyCSEP