FloatCSEP
Testing of latest floatCSEP tutorials...
Contents
Interpretting yml files
syntax may not be consistent, with mix of colon: attr_name: attr_value and colon: dash then attr_name: attr_value The file paths are relative to the config.yml file The valid module names are not clear the valid cmap is not clear No indication that the attri catalog: the value is boolean True
Models:
-best_model:
path: best_model.dat
Test Cases
- case_a
The rules for specifying a test module name seem to be give the
func: poisson_evaluations.number_test
plot_func: plot_poisson_consistency_test
- case_b
- case_c
- case_d
introduces wheel as a model
- case_e
The impact of the plot command not obvious. Seems to replace cmap: magma with colormap:magma, which may mean the same thing.
- case_f
Error when replacing the catalog: geonet_catalog statement as described in the docs....
Traceback (most recent call last):
File "/Users/maechlin/anaconda3/envs/csep_env/bin/floatcsep", line 8, in <module>
sys.exit(floatcsep())
^^^^^^^^^^^
File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/commands/main.py", line 224, in floatcsep
func(**vars(args))
File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/commands/main.py", line 79, in run
exp = Experiment.from_yml(config_yml=config, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/experiment.py", line 690, in from_yml
return cls(**_dict, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^
File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/experiment.py", line 160, in __init__
self.catalog_repo.set_main_catalog(catalog, self.time_config, self.region_config)
File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/infrastructure/repositories.py", line 368, in set_main_catalog
self.catalog = catalog
^^^^^^^^^^^^
File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/infrastructure/repositories.py", line 429, in catalog
self._catalog = parse_csep_func(cat)
^^^^^^^^^^^^^^^^^^^^
File "/Users/maechlin/anaconda3/envs/csep_env/lib/python3.11/site-packages/floatcsep/utils/helpers.py", line 85, in parse_csep_func
raise AttributeError(
AttributeError: Evaluation/Plot/Region function query_geonet has not yet been implemented in floatcsep or pycsep
(csep_env) maechlin@Philip-James-MacBook case_f %
- case_f
How does floatCSEP determine the number of tasks e.g. below
2024-10-21 15:51:40 INFO - Setting up experiment's tasks 2024-10-21 15:51:40 INFO - Running 16 tasks
- case_g
replaced models.yml build: venv with build: docker and it still runs... shutdown docker on laptop, and run again, and still runs..."Dockermanager"
- case_h
Put dependencies on model developers to ensure they provide an environment.yml file in the root of the gitrepo. This is used to build the
read the docs links for floatCSEP
Mac Hardward
- Macbook pro Quad-core Intel i5
- Sonoma 14.7
Conda environment on Mac
/Users/maechlin/dev
$ conda info
active environment : base
active env location : /Users/maechlin/anaconda3
shell level : 1
user config file : /Users/maechlin/.condarc
populated config files : /Users/maechlin/.condarc
conda version : 23.5.0
conda-build version : 3.18.11
python version : 3.8.15.final.0
$ conda list
- pycsep 0.6.2 pyhd8ed1ab_0 conda-forge
Update to conda environment command:
- conda create --name csep_env
- conda activate csep_env
- conda install python=3.11
- clone https://github.com/cseptesting/floatcsep
- cd floatcsep
- pip install .
- Error on build of obspy -
copying obspy/signal/tests/data/tiny_quality_file.mseed -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data
copying obspy/signal/tests/data/unknown.resp -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data
creating build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data/segfaulting_RESPs
copying obspy/signal/tests/data/segfaulting_RESPs/RESP.IE.LLRI..EHZ -> build/lib.macosx-10.13-x86_64-cpython-311/obspy/signal/tests/data/segfaulting_RESPs
running build_ext
building 'gcf' extension
creating build/temp.macosx-10.13-x86_64-cpython-311/obspy/io/gcf/src
clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/maechlin/anaconda3/envs/csep_env/include -fPIC -O2 -isystem /Users/maechlin/anaconda3/envs/csep_env/include -I/Users/maechlin/anaconda3/envs/csep_env/include/python3.11 -c obspy/io/gcf/src/gcf_io.c -o build/temp.macosx-10.13-x86_64-cpython-311/obspy/io/gcf/src/gcf_io.o
xcode-select: note: No developer tools were found, requesting install.
If developer tools are located at a non-default location on disk, use `sudo xcode-select --switch path/to/Xcode.app` to specify the Xcode that you wish to use for command line developer tools, and cancel the installation dialog.
See `man xcode-select` for more details.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for obspy
Successfully built floatcsep pycsep
Failed to build obspy
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (obspy)
Try install of clang on Mac
- xcode-select --install
Brings up a install window on Mac desktop with 5 minute install
- Exit environment
- New terminal window
- conda activity csep_env
- cd dev/floatcsep
- pip install .
Complete build no errors
