Difference between revisions of "UCVM etree for Garner Valley"

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(Created page with " == Garner Valley == Generate etree with different parameters for Garner Valley {| | thumb|300px|ROI: Garner Valley |} == Related Links == *UCVM")
 
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A sh script used to generate the config file and running ucvm2etree
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 +
<pre>
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#!/bin/sh 
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 +
#Request for etree
 +
#From:  Esmaeilzadeh Seylabi, Elnaz <elnaz@caltech.edu>
 +
#CC:    Ricardo Taborda Rios <rtaborda@eafit.edu.co>, Asimaki,
 +
#        Domniki (Domniki) <domniki@caltech.edu>,
 +
#        Doriam Leidin Restrepo Sánchez <drestre6@eafit.edu.co>
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 +
 +
etree_go () {
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  ${UCVM_INSTALL}/bin/ucvm2etree -f ${ETREE_CONFIG}
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}
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 +
## generate the etree.conf
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etree_foo() {
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 +
configfile=./${ETREE_CONFIG}
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 +
/bin/cat >$configfile << END
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 +
#
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# ${DATE}
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#
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# ${ETREE_CONFIG}
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#
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proj=geo-bilinear
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lon_0=-116.8593
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lat_0=33.6403
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lon_1=-116.6457
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lat_1=33.7958
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lon_2=-116.3984
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lat_2=33.5572
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lon_3=-116.6119
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lat_3=33.4022
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# Domain dimensions (meters):
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x-size=26250.0000
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y-size=35000.0000
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z-size=4375.0000
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# Max freq, points per wavelength, Vs min
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max_freq=${MAX_FREQ}
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ppwl=${PPWL}
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vs_min=${VS_MIN}
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# Blocks partition parameters:
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nx=6
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ny=8
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# Max allowed size of octants in meters
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max_octsize=10000.0
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# Etree parameters and info
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title=GarnerValley_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms
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author=Mei_Hui_Su4Elnza
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date=02/27/2019
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outputfile=./${LABEL}_garnervalley_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms.e
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format=etree
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# UCVM parameters
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ucvmstr=${MODEL}
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ucvm_interp_zrange=0.0,350.0
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ucvmconf=${UCVM_INSTALL}/conf/ucvm.conf
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 +
# Scratch
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scratch=./scratch
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#
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# Buffering parameters
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#
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# Etree buffer size in MB
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buf_etree_cache=128
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# Max octants to buffer for flat file during extraction
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buf_extract_mem_max_oct=4194304
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# Max octants to save in flat file before reporting full during extraction
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buf_extract_ffile_max_oct=16000000
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# Max octants to read from input flat file during sorting
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buf_sort_ffile_max_oct=20000000
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# Minimum number of octants between reports during merging
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buf_merge_report_min_oct=10000000
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# MPI send/recv octant buffer size during merging
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buf_merge_sendrecv_buf_oct=4096
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# Etree read/write octant buffer size during merging
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buf_merge_io_buf_oct=4194304
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END
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}
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##
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## etree_input.txt
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#
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#label,MODEL,GTL,MAX_FREQ, PPWL, VS_MIN
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#test1,cvmh,gtl,0.5,10.0,1000
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#test1,cvmh,nogtl,0.5,10.0,1000
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#test2,cvmh,gtl,5,10.0,1000
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#test2,cvmh,nogtl,5,10.0,1000
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#Elnaz1,cvmh,gtl,5,10,200
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#Elnaz1,cvmh,nogtl,5,10,200
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#Elnaz2,cvmh,gtl,5,10,150
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#Elnaz2,cvmh,nogtl,5,10,150
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UCVM_INSTALL="/home/scec-00/mei/ucvmc_18_5/install"
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DATE=`date`
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input="etree_input.txt"
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while IFS= read -r file; do
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  arrData=(${file//,/ })
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  [[ $arrData =~ ^#.* ]] && continue
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  LABEL=${arrData[0]}
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  MODEL=${arrData[1]}
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  GTL=${arrData[2]}
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  MAX_FREQ=${arrData[3]}
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  PPWL=${arrData[4]}
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  VS_MIN=${arrData[5]}
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  ETREE_CONFIG=${LABEL}_garnervalley_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms.conf
 +
 
 +
  etree_foo
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  etree_go
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 +
done < "$input"
 +
</pre>
  
 
== Related Links ==
 
== Related Links ==
 
*[[UCVM]]
 
*[[UCVM]]

Revision as of 21:20, 14 March 2019

Garner Valley

Generate etree with different parameters for Garner Valley

ROI: Garner Valley


A sh script used to generate the config file and running ucvm2etree 

#!/bin/sh  

#Request for etree
#From:   Esmaeilzadeh Seylabi, Elnaz <elnaz@caltech.edu>
#CC:     Ricardo Taborda Rios <rtaborda@eafit.edu.co>, Asimaki,
#        Domniki (Domniki) <domniki@caltech.edu>,
#        Doriam Leidin Restrepo Sánchez <drestre6@eafit.edu.co>


etree_go () {
  ${UCVM_INSTALL}/bin/ucvm2etree -f ${ETREE_CONFIG}
}

## generate the etree.conf
etree_foo() {

configfile=./${ETREE_CONFIG}

/bin/cat >$configfile << END 

#
# ${DATE}
#
# ${ETREE_CONFIG}
#

proj=geo-bilinear 
lon_0=-116.8593
lat_0=33.6403

lon_1=-116.6457
lat_1=33.7958

lon_2=-116.3984
lat_2=33.5572

lon_3=-116.6119
lat_3=33.4022

# Domain dimensions (meters):
x-size=26250.0000
y-size=35000.0000
z-size=4375.0000

# Max freq, points per wavelength, Vs min
max_freq=${MAX_FREQ}
ppwl=${PPWL}
vs_min=${VS_MIN}

# Blocks partition parameters:
nx=6
ny=8
 
# Max allowed size of octants in meters
max_octsize=10000.0

# Etree parameters and info
title=GarnerValley_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms
author=Mei_Hui_Su4Elnza
date=02/27/2019
outputfile=./${LABEL}_garnervalley_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms.e
format=etree 

# UCVM parameters
ucvmstr=${MODEL}
ucvm_interp_zrange=0.0,350.0 
ucvmconf=${UCVM_INSTALL}/conf/ucvm.conf

# Scratch
scratch=./scratch

#
# Buffering parameters
#
# Etree buffer size in MB
buf_etree_cache=128
# Max octants to buffer for flat file during extraction
buf_extract_mem_max_oct=4194304
# Max octants to save in flat file before reporting full during extraction
buf_extract_ffile_max_oct=16000000
# Max octants to read from input flat file during sorting
buf_sort_ffile_max_oct=20000000
# Minimum number of octants between reports during merging

buf_merge_report_min_oct=10000000
# MPI send/recv octant buffer size during merging
buf_merge_sendrecv_buf_oct=4096
# Etree read/write octant buffer size during merging
buf_merge_io_buf_oct=4194304


END
}

##
## etree_input.txt
#
#label,MODEL,GTL,MAX_FREQ, PPWL, VS_MIN
#test1,cvmh,gtl,0.5,10.0,1000
#test1,cvmh,nogtl,0.5,10.0,1000
#test2,cvmh,gtl,5,10.0,1000
#test2,cvmh,nogtl,5,10.0,1000
#Elnaz1,cvmh,gtl,5,10,200
#Elnaz1,cvmh,nogtl,5,10,200
#Elnaz2,cvmh,gtl,5,10,150
#Elnaz2,cvmh,nogtl,5,10,150

UCVM_INSTALL="/home/scec-00/mei/ucvmc_18_5/install"
DATE=`date`

input="etree_input.txt"
while IFS= read -r file; do
  arrData=(${file//,/ })
  [[ $arrData =~ ^#.* ]] && continue
  LABEL=${arrData[0]}
  MODEL=${arrData[1]}
  GTL=${arrData[2]}
  MAX_FREQ=${arrData[3]}
  PPWL=${arrData[4]}
  VS_MIN=${arrData[5]}
  ETREE_CONFIG=${LABEL}_garnervalley_${MODEL}_${GTL}_${MAX_FREQ}hz_${PPWL}pts_${VS_MIN}ms.conf
  
  etree_foo
  etree_go

done < "$input"

Related Links

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