UCVM Plotting on Discovery: Difference between revisions

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== Setting up Plotting Environment for the first time ==
== Setting up Plotting Environment for the first time ==
conda environment
 
make sure UCVM_INSTALL_PATH is set and has a working UCVM installation


<pre>
<pre>
(base) mei@discovery1:/project/scec_608/mei$ conda env list
%ucvm_query -H
# conda environments:
</pre>
#
forGeomodelgrids        /home1/mei/.conda/envs/forGeomodelgrids
py3ucvm                  /home1/mei/.conda/envs/py3ucvm
ucvmPlotting            /home1/mei/.conda/envs/ucvmPlotting
withPython2              /home1/mei/.conda/envs/withPython2
base                  *  /spack/apps/linux-centos7-x86_64/gcc-8.3.0/anaconda3-2019.10-bpb6unkhyvkirwkg44uqchcy5jyhzhvt


(base) mei@discovery1:/project/scec_608/mei$ conda activate ucvmPlotting
create a conda environment


(ucvmPlotting) mei@discovery1:/project/scec_608/mei$ conda deactivate
<pre>
%conda create -n ucvmPlotting python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires
</pre>


(base) mei@discovery1:/project/scec_608/mei$
setup conda environment with ucvm_plotting, just need to do this once


<pre>
%conda activate ucvmPlotting
%cd $UCVM_INSTALL_PATH/conf
%source ucvm_env.sh
%cd $UCVM_INSTALL_PATH
%git clone https://github.com/SCECcode/ucvm_plotting.git
%cd ucvm_plotting
%./unpack-dist
%./ucvm_plotting/run_depth.sh
%conda deactivate
</pre>
</pre>


setting up ucvmPlotting with conda environment
you should see the new ucvmPlotting


<pre>
<pre>
Get a copy of ucvmPlotting.yml
%cp /project/scec_608/Mei/ucvmPlotting.yml .
%conda env list
%conda env list
 
</pre>
if you see ucvmPlotting,
do this,
  %conda activate ucvmPlotting
  skip to  NEXT
else,
  %conda env create -f ucvmPlotting.yml
  this will take a while..
 
  %conda env list
 
  should see ucvmPlotting as one of the environment
 
  %conda activate ucvmPlotting
 
  %2project
  %git clone https://github.com/SCECcode/ucvm_plotting.git
  %cd ucvm_plotting
  %./unpack-dist


NEXT:
NEXT:


check if ucvm_plotting is there,
to run ucvmPlotting tests on worker node
 
%2project
%cd ucvm_plotting/ucvm_plotting
%./run_depth.sh
 
to run manually,
%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
%view_png.py -f horizontal.png


<pre>
%salloc --ntasks=1 --time=02:00:00
%conda activate ucvmPlotting
%cd $UCVM_INSTALL_PATH/ucvm_plotting
%cd examples
%./run-tests
%conda deactivate
%exit
</pre>
</pre>


== Create Plot using Discovery ==
== Create Plot using Discovery ==
Assuiming plotting has been setup for your account, you can Setup the plotting environment,
Assuiming plotting has been setup for your account, you can startup the plotting environment,
*%conda env list  
*%conda env list  
*%conda activate ucvmPlotting
*%conda activate ucvmPlotting
*%2test


then..
generate plot in either head or worker node


*%plot_depth_profile.py -s 33.8628,-118.2525 -b 0 -e 10000 -d vs,vp,density -v 100 -c cvmh -o depth.png
<pre>
%conda activate ucvmPlotting
%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
%conda deactivate
</pre>


Then, you can view the plots with
to view any of the png files with view_png.py, you have
to be on the head node and in uvcmPlotting conda environment


%view_png.py -f depth.png
at head node,
 
...


<pre>
%conda activate ucvmPlotting
%view_png.py -f horizontal.png
%conda deactivate
%conda deactivate
 
</pre>


== Related Entries ==
== Related Entries ==

Latest revision as of 01:55, 4 December 2021

Create Plot using Website - 1D Vertical Profile

Create 1D vertical profile for location in LA Basin (CSU Dominquez Hills):

  • 33.8628
  • -118.2525
  • 0-10k
  • 100m

Create Plot using Website:

Configure Xwindows on Discovery

Setting up Plotting Environment for the first time

make sure UCVM_INSTALL_PATH is set and has a working UCVM installation 

%ucvm_query -H

create a conda environment 

%conda create -n ucvmPlotting python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires

setup conda environment with ucvm_plotting, just need to do this once 

%conda activate ucvmPlotting
%cd $UCVM_INSTALL_PATH/conf
%source ucvm_env.sh
%cd $UCVM_INSTALL_PATH
%git clone https://github.com/SCECcode/ucvm_plotting.git
%cd ucvm_plotting
%./unpack-dist
%./ucvm_plotting/run_depth.sh
%conda deactivate

you should see the new ucvmPlotting 

%conda env list

NEXT:

to run ucvmPlotting tests on worker node 

%salloc --ntasks=1 --time=02:00:00
%conda activate ucvmPlotting
%cd $UCVM_INSTALL_PATH/ucvm_plotting
%cd examples
%./run-tests
%conda deactivate
%exit

Create Plot using Discovery

Assuiming plotting has been setup for your account, you can startup the plotting environment,

  • %conda env list
  • %conda activate ucvmPlotting

generate plot in either head or worker node 

%conda activate ucvmPlotting
%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
%conda deactivate

to view any of the png files with view_png.py, you have to be on the head node and in uvcmPlotting conda environment

at head node, 

%conda activate ucvmPlotting
%view_png.py -f horizontal.png
%conda deactivate

Related Entries

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