Difference between revisions of "UCVM Plotting on Discovery"

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*[[Export_XWindows_to_Client]]
 
*[[Export_XWindows_to_Client]]
  
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== Create Plot using Discovery ==
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== Setting up Plotting Environment for the first time ==
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Assuiming plotting has been setup for your account, you can Setup the plotting environment,
 
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*%conda env list
 
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*%conda activate ucvmPlotting
 
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*%2test
 
  
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then..
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make sure UCVM_INSTALL_PATH is set and has a working UCVM installation
  
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*%plot_depth_profile.py -s 33.8628,-118.2525 -b 0 -e 10000 -d vs,vp,density -v 100 -c cvmh -o depth.png
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<pre>
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%ucvm_query -H
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</pre>
  
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Then, you can view the plots with
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create a conda environment
  
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%view_png.py -f depth.png
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<pre>
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%conda create -n ucvmPlotting python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires
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</pre>
  
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...
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setup conda environment with ucvm_plotting, just need to do this once
  
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<pre>
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%conda activate ucvmPlotting
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%cd $UCVM_INSTALL_PATH/conf
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%source ucvm_env.sh
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%cd $UCVM_INSTALL_PATH
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%git clone https://github.com/SCECcode/ucvm_plotting.git
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%cd ucvm_plotting
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%./unpack-dist
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%./ucvm_plotting/run_depth.sh
 
%conda deactivate
 
%conda deactivate
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== Setting up Plotting Environment for the first time ==
 
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conda environment
 
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<pre>
 
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(base) mei@discovery1:/project/scec_608/mei$ conda env list
 
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# conda environments:
 
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#
 
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forGeomodelgrids        /home1/mei/.conda/envs/forGeomodelgrids
 
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py3ucvm                  /home1/mei/.conda/envs/py3ucvm
 
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ucvmPlotting            /home1/mei/.conda/envs/ucvmPlotting
 
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withPython2              /home1/mei/.conda/envs/withPython2
 
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base                  *  /spack/apps/linux-centos7-x86_64/gcc-8.3.0/anaconda3-2019.10-bpb6unkhyvkirwkg44uqchcy5jyhzhvt
 
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(base) mei@discovery1:/project/scec_608/mei$ conda activate ucvmPlotting
 
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(ucvmPlotting) mei@discovery1:/project/scec_608/mei$ conda deactivate
 
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(base) mei@discovery1:/project/scec_608/mei$
 
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</pre>
 
</pre>
  
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setting up ucvmPlotting with conda environment
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you should see the new ucvmPlotting
  
 
<pre>
 
<pre>
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Get a copy of ucvmPlotting.yml
 
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%cp /project/scec_608/Mei/ucvmPlotting.yml .
 
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%conda env list
 
%conda env list
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</pre>
  
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if you see ucvmPlotting,
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NEXT:
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do this,
 
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  %conda activate ucvmPlotting
 
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  skip to  NEXT
 
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else,
 
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  %conda env create -f ucvmPlotting.yml
 
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  this will take a while..
 
  
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  %conda env list
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to run ucvmPlotting tests on worker node
  
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  should see ucvmPlotting as one of the environment
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<pre>
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%salloc --ntasks=1 --time=02:00:00
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%conda activate ucvmPlotting
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%cd $UCVM_INSTALL_PATH/ucvm_plotting
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%cd examples
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%./run-tests
 +
%conda deactivate
 +
%exit
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</pre>
  
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  %conda activate ucvmPlotting
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== Create Plot using Discovery ==
 +
Assuiming plotting has been setup for your account, you can startup the plotting environment,
 +
*%conda env list
 +
*%conda activate ucvmPlotting
  
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  %2project
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generate plot in either head or worker node
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  %git clone https://github.com/SCECcode/ucvm_plotting.git
 
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  %cd ucvm_plotting
 
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  %./unpack-dist
 
  
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NEXT:
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<pre>
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%conda activate ucvmPlotting
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%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
 +
%conda deactivate
 +
</pre>
  
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check if ucvm_plotting is there,
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to view any of the png files with view_png.py, you have
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to be on the head node and in uvcmPlotting conda environment
  
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%2project
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at head node,
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%cd ucvm_plotting/ucvm_plotting
 
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%./run_depth.sh
 
  
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to run manually,
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<pre>
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%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
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%conda activate ucvmPlotting
 
%view_png.py -f horizontal.png
 
%view_png.py -f horizontal.png
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%conda deactivate
 
</pre>
 
</pre>
  

Latest revision as of 01:55, 4 December 2021

Create Plot using Website - 1D Vertical Profile

Create 1D vertical profile for location in LA Basin (CSU Dominquez Hills):

  • 33.8628
  • -118.2525
  • 0-10k
  • 100m

Create Plot using Website:

Configure Xwindows on Discovery

Setting up Plotting Environment for the first time

make sure UCVM_INSTALL_PATH is set and has a working UCVM installation 

%ucvm_query -H

create a conda environment 

%conda create -n ucvmPlotting python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires

setup conda environment with ucvm_plotting, just need to do this once 

%conda activate ucvmPlotting
%cd $UCVM_INSTALL_PATH/conf
%source ucvm_env.sh
%cd $UCVM_INSTALL_PATH
%git clone https://github.com/SCECcode/ucvm_plotting.git
%cd ucvm_plotting
%./unpack-dist
%./ucvm_plotting/run_depth.sh
%conda deactivate

you should see the new ucvmPlotting 

%conda env list

NEXT:

to run ucvmPlotting tests on worker node 

%salloc --ntasks=1 --time=02:00:00
%conda activate ucvmPlotting
%cd $UCVM_INSTALL_PATH/ucvm_plotting
%cd examples
%./run-tests
%conda deactivate
%exit

Create Plot using Discovery

Assuiming plotting has been setup for your account, you can startup the plotting environment,

  • %conda env list
  • %conda activate ucvmPlotting

generate plot in either head or worker node 

%conda activate ucvmPlotting
%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
%conda deactivate

to view any of the png files with view_png.py, you have to be on the head node and in uvcmPlotting conda environment

at head node, 

%conda activate ucvmPlotting
%view_png.py -f horizontal.png
%conda deactivate

Related Entries

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