Difference between revisions of "UCVM Plotting on Discovery"

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== Setting up Plotting Environment for the first time ==
 
== Setting up Plotting Environment for the first time ==
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conda environment
+
 
 +
make sure UCVM_INSTALL_PATH is set and has a working UCVM installation
  
 
<pre>
 
<pre>
−
(base) mei@discovery1:/project/scec_608/mei$ conda env list
+
%ucvm_query -H
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# conda environments:
+
</pre>
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#
 
−
forGeomodelgrids        /home1/mei/.conda/envs/forGeomodelgrids
 
−
py3ucvm                  /home1/mei/.conda/envs/py3ucvm
 
−
ucvmPlotting            /home1/mei/.conda/envs/ucvmPlotting
 
−
withPython2              /home1/mei/.conda/envs/withPython2
 
−
base                  *  /spack/apps/linux-centos7-x86_64/gcc-8.3.0/anaconda3-2019.10-bpb6unkhyvkirwkg44uqchcy5jyhzhvt
 
  
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(base) mei@discovery1:/project/scec_608/mei$ conda activate ucvmPlotting
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create a conda environment
  
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(ucvmPlotting) mei@discovery1:/project/scec_608/mei$ conda deactivate
+
<pre>
 +
%conda create -n ucvmPlotting python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires
 +
</pre>
  
−
(base) mei@discovery1:/project/scec_608/mei$
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setup conda environment with ucvm_plotting, just need to do this once
  
 +
<pre>
 +
%conda activate ucvmPlotting
 +
%cd $UCVM_INSTALL_PATH/conf
 +
%source ucvm_env.sh
 +
%cd $UCVM_INSTALL_PATH
 +
%git clone https://github.com/SCECcode/ucvm_plotting.git
 +
%cd ucvm_plotting
 +
%./unpack-dist
 +
%./ucvm_plotting/run_depth.sh
 +
%conda deactivate
 
</pre>
 
</pre>
  
−
setting up ucvmPlotting with conda environment
+
you should see the new ucvmPlotting
  
 
<pre>
 
<pre>
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Get a copy of ucvmPlotting.yml
 
−
 
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%cp /project/scec_608/Mei/ucvmPlotting.yml .
 
−
 
 
%conda env list
 
%conda env list
−
 
+
</pre>
−
if you see ucvmPlotting,
 
−
do this,
 
−
  %conda activate ucvmPlotting
 
−
  skip to  NEXT
 
−
else,
 
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  %conda env create -f ucvmPlotting.yml
 
−
  this will take a while..
 
−
 
 
−
  %conda env list
 
−
 
 
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  should see ucvmPlotting as one of the environment
 
−
 
 
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  %conda activate ucvmPlotting
 
−
 
 
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  %2project
 
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  %git clone https://github.com/SCECcode/ucvm_plotting.git
 
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  %cd ucvm_plotting
 
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  %./unpack-dist
 
  
 
NEXT:
 
NEXT:
  
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check if ucvm_plotting is there,
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to run ucvmPlotting tests on worker node
−
 
 
−
%2project
 
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%cd ucvm_plotting/ucvm_plotting
 
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%./run_depth.sh
 
−
 
 
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to run manually,
 
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%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
 
−
%view_png.py -f horizontal.png
 
  
 +
<pre>
 +
%salloc --ntasks=1 --time=02:00:00
 +
%conda activate ucvmPlotting
 +
%cd $UCVM_INSTALL_PATH/ucvm_plotting
 +
%cd examples
 +
%./run-tests
 +
%conda deactivate
 +
%exit
 
</pre>
 
</pre>
−
 
  
 
== Create Plot using Discovery ==
 
== Create Plot using Discovery ==
−
Assuiming plotting has been setup for your account, you can Setup the plotting environment,
+
Assuiming plotting has been setup for your account, you can startup the plotting environment,
 
*%conda env list  
 
*%conda env list  
 
*%conda activate ucvmPlotting
 
*%conda activate ucvmPlotting
−
*%2test
 
  
−
then..
+
generate plot in either head or worker node
  
−
*%plot_depth_profile.py -s 33.8628,-118.2525 -b 0 -e 10000 -d vs,vp,density -v 100 -c cvmh -o depth.png
+
<pre>
 +
%conda activate ucvmPlotting
 +
%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
 +
%conda deactivate
 +
</pre>
  
−
Then, you can view the plots with
+
to view any of the png files with view_png.py, you have
 +
to be on the head node and in uvcmPlotting conda environment
  
−
%view_png.py -f depth.png
+
at head node,
−
 
 
−
...
 
  
 +
<pre>
 +
%conda activate ucvmPlotting
 +
%view_png.py -f horizontal.png
 
%conda deactivate
 
%conda deactivate
−
 
+
</pre>
  
 
== Related Entries ==
 
== Related Entries ==

Latest revision as of 01:55, 4 December 2021

Create Plot using Website - 1D Vertical Profile

Create 1D vertical profile for location in LA Basin (CSU Dominquez Hills):

  • 33.8628
  • -118.2525
  • 0-10k
  • 100m

Create Plot using Website:

Configure Xwindows on Discovery

Setting up Plotting Environment for the first time

make sure UCVM_INSTALL_PATH is set and has a working UCVM installation 

%ucvm_query -H

create a conda environment 

%conda create -n ucvmPlotting python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires

setup conda environment with ucvm_plotting, just need to do this once 

%conda activate ucvmPlotting
%cd $UCVM_INSTALL_PATH/conf
%source ucvm_env.sh
%cd $UCVM_INSTALL_PATH
%git clone https://github.com/SCECcode/ucvm_plotting.git
%cd ucvm_plotting
%./unpack-dist
%./ucvm_plotting/run_depth.sh
%conda deactivate

you should see the new ucvmPlotting 

%conda env list

NEXT:

to run ucvmPlotting tests on worker node 

%salloc --ntasks=1 --time=02:00:00
%conda activate ucvmPlotting
%cd $UCVM_INSTALL_PATH/ucvm_plotting
%cd examples
%./run-tests
%conda deactivate
%exit

Create Plot using Discovery

Assuiming plotting has been setup for your account, you can startup the plotting environment,

  • %conda env list
  • %conda activate ucvmPlotting

generate plot in either head or worker node 

%conda activate ucvmPlotting
%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
%conda deactivate

to view any of the png files with view_png.py, you have to be on the head node and in uvcmPlotting conda environment

at head node, 

%conda activate ucvmPlotting
%view_png.py -f horizontal.png
%conda deactivate

Related Entries

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