Difference between revisions of "UCVM Plotting on Discovery"
| Line 21: | Line 21: | ||
== Setting up Plotting Environment for the first time == | == Setting up Plotting Environment for the first time == | ||
| + | |||
| + | make sure UCVM_INSTALL_PATH is set and has a working UCVM installation | ||
| + | |||
| + | <pre> | ||
| + | %ucvm_query -H | ||
| + | </pre> | ||
create a conda environment | create a conda environment | ||
| Line 28: | Line 34: | ||
</pre> | </pre> | ||
| − | build | + | build ucvmPlotting with conda environment |
| + | <pre> | ||
| + | %conda activate withPython2 | ||
| + | %cd $UCVM_INSTALL_PATH/conf | ||
| + | %source ucvm_env.sh | ||
| + | %cd $UCVM_INSTALL_PATH | ||
| + | %git clone https://github.com/SCECcode/ucvm_plotting.git | ||
| + | %cd ucvm_plotting | ||
| + | %./unpack-dist | ||
| + | %./ucvm_plotting/run_depth.sh | ||
| + | %conda deactivate | ||
| + | </pre> | ||
| − | + | you should see the new ucvmPlotting | |
<pre> | <pre> | ||
| − | + | %Conda env list | |
| + | </pre> | ||
| − | + | NEXT: | |
| − | + | to run ucvmPlotting tests on worker node | |
| − | + | <pre> | |
| − | + | %salloc --ntasks=1 --time=02:00:00 | |
| − | + | %conda activate ucvmPlotting | |
| − | + | %cd $UCVM_INSTALL_PATH/ucvm_plotting | |
| − | + | %cd examples | |
| − | + | %./run-tests | |
| − | + | %conda deactivate | |
| + | %exit | ||
| + | </pre> | ||
| − | + | to view any of the png files with view_png.py, you have | |
| + | to be on the head node and in uvcmPlotting conda environment | ||
| − | + | at head node, | |
| − | + | <pre> | |
| + | %conda activate ucvmPlotting | ||
| + | %view_png.py -f someplot.png | ||
| + | %conda deactivate | ||
| + | </pre> | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
%2project | %2project | ||
Revision as of 01:41, 4 December 2021
Contents
Create Plot using Website - 1D Vertical Profile
Create 1D vertical profile for location in LA Basin (CSU Dominquez Hills):
- 33.8628
- -118.2525
- 0-10k
- 100m
Create Plot using Website:
- point browser to http://moho.scec.org/UCVM_web/web/viewer.php
- select "1D Vertical Profile"
- enter 33.8628 for Latitude
- enter -118.2525 for Longitude
- enter 0 for Z start
- enter 10000 for Z ends
- enter 100 for Z step
Configure Xwindows on Discovery
Setting up Plotting Environment for the first time
make sure UCVM_INSTALL_PATH is set and has a working UCVM installation
%ucvm_query -H
create a conda environment
%conda create -n ucvmPlotting python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires
build ucvmPlotting with conda environment
%conda activate withPython2 %cd $UCVM_INSTALL_PATH/conf %source ucvm_env.sh %cd $UCVM_INSTALL_PATH %git clone https://github.com/SCECcode/ucvm_plotting.git %cd ucvm_plotting %./unpack-dist %./ucvm_plotting/run_depth.sh %conda deactivate
you should see the new ucvmPlotting
%Conda env list
NEXT:
to run ucvmPlotting tests on worker node
%salloc --ntasks=1 --time=02:00:00 %conda activate ucvmPlotting %cd $UCVM_INSTALL_PATH/ucvm_plotting %cd examples %./run-tests %conda deactivate %exit
to view any of the png files with view_png.py, you have to be on the head node and in uvcmPlotting conda environment
at head node,
%conda activate ucvmPlotting %view_png.py -f someplot.png %conda deactivate
%2project
%cd ucvm_plotting/ucvm_plotting
%./run_depth.sh
to run manually, %plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png %view_png.py -f horizontal.png
Create Plot using Discovery
Assuiming plotting has been setup for your account, you can Setup the plotting environment,
- %conda env list
- %conda activate ucvmPlotting
- %2test
then..
- %plot_depth_profile.py -s 33.8628,-118.2525 -b 0 -e 10000 -d vs,vp,density -v 100 -c cvmh -o depth.png
Then, you can view the plots with
%view_png.py -f depth.png
...
%conda deactivate
