Difference between revisions of "UCVM Plotting on Discovery"

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== Setting up Plotting Environment for the first time ==
 
== Setting up Plotting Environment for the first time ==
conda environment
 
  
setting up ucvmPlotting with conda environment
+
make sure UCVM_INSTALL_PATH is set and has a working UCVM installation
  
 
<pre>
 
<pre>
Get a copy of ucvmPlotting.yml
+
%ucvm_query -H
 +
</pre>
  
%cp /project/scec_608/Mei/ucvmPlotting.yml .
+
create a conda environment
  
%conda env list
+
<pre>
 +
%conda create -n ucvmPlotting python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires
 +
</pre>
  
if you see ucvmPlotting,
+
setup conda environment with ucvm_plotting, just need to do this once
do this,
 
  %conda activate ucvmPlotting
 
  skip to  NEXT
 
else,
 
  %conda env create -f ucvmPlotting.yml
 
  this will take a while..
 
  
  %conda env list
+
<pre>
 +
%conda activate ucvmPlotting
 +
%cd $UCVM_INSTALL_PATH/conf
 +
%source ucvm_env.sh
 +
%cd $UCVM_INSTALL_PATH
 +
%git clone https://github.com/SCECcode/ucvm_plotting.git
 +
%cd ucvm_plotting
 +
%./unpack-dist
 +
%./ucvm_plotting/run_depth.sh
 +
%conda deactivate
 +
</pre>
  
  should see ucvmPlotting as one of the environment
+
you should see the new ucvmPlotting
  
  %conda activate ucvmPlotting
+
<pre>
 
+
%conda env list
  %2project
+
</pre>
  %git clone https://github.com/SCECcode/ucvm_plotting.git
 
  %cd ucvm_plotting
 
  %./unpack-dist
 
  
 
NEXT:
 
NEXT:
  
check if ucvm_plotting is there,
+
to run ucvmPlotting tests on worker node
 
 
%2project
 
%cd ucvm_plotting/ucvm_plotting
 
%./run_depth.sh
 
 
 
to run manually,
 
%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
 
%view_png.py -f horizontal.png
 
  
 +
<pre>
 +
%salloc --ntasks=1 --time=02:00:00
 +
%conda activate ucvmPlotting
 +
%cd $UCVM_INSTALL_PATH/ucvm_plotting
 +
%cd examples
 +
%./run-tests
 +
%conda deactivate
 +
%exit
 
</pre>
 
</pre>
  
 
== Create Plot using Discovery ==
 
== Create Plot using Discovery ==
Assuiming plotting has been setup for your account, you can Setup the plotting environment,
+
Assuiming plotting has been setup for your account, you can startup the plotting environment,
 
*%conda env list  
 
*%conda env list  
 
*%conda activate ucvmPlotting
 
*%conda activate ucvmPlotting
*%2test
 
  
then..
+
generate plot in either head or worker node
  
*%plot_depth_profile.py -s 33.8628,-118.2525 -b 0 -e 10000 -d vs,vp,density -v 100 -c cvmh -o depth.png
+
<pre>
 +
%conda activate ucvmPlotting
 +
%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
 +
%conda deactivate
 +
</pre>
  
Then, you can view the plots with
+
to view any of the png files with view_png.py, you have
 +
to be on the head node and in uvcmPlotting conda environment
  
%view_png.py -f depth.png
+
at head node,
 
 
...
 
  
 +
<pre>
 +
%conda activate ucvmPlotting
 +
%view_png.py -f horizontal.png
 
%conda deactivate
 
%conda deactivate
 
+
</pre>
  
 
== Related Entries ==
 
== Related Entries ==

Latest revision as of 01:55, 4 December 2021

Create Plot using Website - 1D Vertical Profile

Create 1D vertical profile for location in LA Basin (CSU Dominquez Hills):

  • 33.8628
  • -118.2525
  • 0-10k
  • 100m

Create Plot using Website:

Configure Xwindows on Discovery

Setting up Plotting Environment for the first time

make sure UCVM_INSTALL_PATH is set and has a working UCVM installation

%ucvm_query -H

create a conda environment

%conda create -n ucvmPlotting python=2.7.15 scipy pip numpy matplotlib basemap basemap-data-hires

setup conda environment with ucvm_plotting, just need to do this once

%conda activate ucvmPlotting
%cd $UCVM_INSTALL_PATH/conf
%source ucvm_env.sh
%cd $UCVM_INSTALL_PATH
%git clone https://github.com/SCECcode/ucvm_plotting.git
%cd ucvm_plotting
%./unpack-dist
%./ucvm_plotting/run_depth.sh
%conda deactivate

you should see the new ucvmPlotting

%conda env list

NEXT:

to run ucvmPlotting tests on worker node

%salloc --ntasks=1 --time=02:00:00
%conda activate ucvmPlotting
%cd $UCVM_INSTALL_PATH/ucvm_plotting
%cd examples
%./run-tests
%conda deactivate
%exit

Create Plot using Discovery

Assuiming plotting has been setup for your account, you can startup the plotting environment,

  • %conda env list
  • %conda activate ucvmPlotting

generate plot in either head or worker node

%conda activate ucvmPlotting
%plot_horizontal_slice.py -b 33.35,-118 -u 34.35,-117 -e 1000 -d vs -c cvmh -a s -s 0.01 -o horizontal.png
%conda deactivate

to view any of the png files with view_png.py, you have to be on the head node and in uvcmPlotting conda environment

at head node,

%conda activate ucvmPlotting
%view_png.py -f horizontal.png
%conda deactivate

Related Entries